HL_7QIZ_049

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

7QIZ|1|2|A|2375, 7QIZ|1|2|A|2376, 7QIZ|1|2|C|2377

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QIZ_049 not in the Motif Atlas

Homologous match to HL_8C3A_051

Geometric discrepancy: 0.0547

The information below is about HL_8C3A_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

7QIZ|1|2|G|2372
7QIZ|1|2|G|2373
7QIZ|1|2|G|2374
7QIZ|1|2|A|2375
7QIZ|1|2|A|2376
7QIZ|1|2|C|2377
7QIZ|1|2|G|2378
7QIZ|1|2|G|2379
7QIZ|1|2|G|2380
7QIZ|1|2|C|2381

Current chains

Chain 2

25S rRNA

Nearby chains

Chain E

Ribosomal protein L3

Chain Q

Pectinesterase

Chain g

60S ribosomal protein eL32