HL_7QIZ_051

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

CUG(OMG)GGCGG

Length

9 nucleotides

Bulged bases

7QIZ|1|2|G|2622

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QIZ_051 not in the Motif Atlas

Homologous match to HL_8C3A_055

Geometric discrepancy: 0.1034

The information below is about HL_8C3A_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

7QIZ|1|2|C|2620
7QIZ|1|2|U|2621
7QIZ|1|2|G|2622
7QIZ|1|2|OMG|2623
7QIZ|1|2|G|2624
7QIZ|1|2|G|2625
7QIZ|1|2|C|2626
7QIZ|1|2|G|2627
7QIZ|1|2|G|2628

Current chains

Chain 2

25S rRNA

Nearby chains

Chain L

60S ribosomal protein L10

Chain d

60S ribosomal protein L29