HL_7QIZ_054

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

CAGAAGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QIZ_054 not in the Motif Atlas

Homologous match to HL_8C3A_058

Geometric discrepancy: 0.1347

The information below is about HL_8C3A_058

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

26

Unit IDs

7QIZ|1|2|C|2697
7QIZ|1|2|A|2698
7QIZ|1|2|G|2699
7QIZ|1|2|A|2700
7QIZ|1|2|A|2701
7QIZ|1|2|G|2702
7QIZ|1|2|G|2703
7QIZ|1|2|G|2704

Current chains

Chain 2

25S rRNA

Nearby chains

Chain L

60S ribosomal protein L10

Chain V

60S ribosomal protein eL21

Chain p

60S ribosomal protein eL42