HL_7QIZ_060

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

U(OMU)(OMG)(PSU)UCA

Length

7 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU, OMG, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QIZ_060 not in the Motif Atlas

Geometric match to HL_5TBW_063

Geometric discrepancy: 0.2854

The information below is about HL_5TBW_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_36430.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

7QIZ|1|2|U|2924
7QIZ|1|2|OMU|2925
7QIZ|1|2|OMG|2926
7QIZ|1|2|PSU|2927
7QIZ|1|2|U|2928
7QIZ|1|2|C|2929
7QIZ|1|2|A|2930

Current chains

Chain 2

25S rRNA

Nearby chains

Chain E

Ribosomal protein L3