HL_7QIZ_064

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

C(PSU)GAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

7QIZ|1|2|G|3119, 7QIZ|1|2|C|3123

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QIZ_064 not in the Motif Atlas

Homologous match to HL_8C3A_068

Geometric discrepancy: 0.182

The information below is about HL_8C3A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

7QIZ|1|2|C|3113
7QIZ|1|2|PSU|3114
7QIZ|1|2|G|3115
7QIZ|1|2|A|3116
7QIZ|1|2|A|3117
7QIZ|1|2|C|3118
7QIZ|1|2|G|3119
7QIZ|1|2|C|3120
7QIZ|1|2|C|3121
7QIZ|1|2|U|3122
7QIZ|1|2|C|3123
7QIZ|1|2|U|3124
7QIZ|1|2|A|3125
7QIZ|1|2|A|3126
7QIZ|1|2|G|3127

Current chains

Chain 2

25S rRNA

Nearby chains

Chain K

60S ribosomal protein uL6

Chain Q

Pectinesterase

Chain o

Ubiquitin