HL_7QIZ_066

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

GCAGACGAC

Length

9 nucleotides

Bulged bases

7QIZ|1|2|C|3297

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QIZ_066 not in the Motif Atlas

Geometric match to HL_5TBW_070

Geometric discrepancy: 0.1159

The information below is about HL_5TBW_070

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.4

Basepair signature

cWW-cSW-F-F-F-cWW

Number of instances in this motif group

9

Unit IDs

7QIZ|1|2|G|3296
7QIZ|1|2|C|3297
7QIZ|1|2|A|3298
7QIZ|1|2|G|3299
7QIZ|1|2|A|3300
7QIZ|1|2|C|3301
7QIZ|1|2|G|3302
7QIZ|1|2|A|3303
7QIZ|1|2|C|3304

Current chains

Chain 2

25S rRNA

Nearby chains

Chain E

Ribosomal protein L3

Chain R

50S ribosomal protein L22, chloroplastic