HL_7QIZ_074

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

GUAAUUC

Length

7 nucleotides

Bulged bases

7QIZ|1|S2|U|157

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QIZ_074 not in the Motif Atlas

Geometric match to HL_4QK9_001

Geometric discrepancy: 0.2219

The information below is about HL_4QK9_001

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

7QIZ|1|S2|G|152
7QIZ|1|S2|U|153
7QIZ|1|S2|A|154
7QIZ|1|S2|A|155
7QIZ|1|S2|U|156
7QIZ|1|S2|U|157
7QIZ|1|S2|C|158

Current chains

Chain S2

18S

Nearby chains

Chain FA

40S ribosomal protein S6

Chain KA

40S ribosomal protein S24