HL_7QIZ_084
3D structure
- PDB id
- 7QIZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Specific features and methylation sites of a plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- AAUCUAAAUCCCU
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7QIZ_084 not in the Motif Atlas
- Geometric match to HL_4V88_199
- Geometric discrepancy: 0.1039
- The information below is about HL_4V88_199
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_05304.1
- Basepair signature
- cWW-cWW-F-F-tSH-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
7QIZ|1|S2|A|523
7QIZ|1|S2|A|524
7QIZ|1|S2|U|525
7QIZ|1|S2|C|526
7QIZ|1|S2|U|527
7QIZ|1|S2|A|528
7QIZ|1|S2|A|529
7QIZ|1|S2|A|530
7QIZ|1|S2|U|531
7QIZ|1|S2|C|532
7QIZ|1|S2|C|533
7QIZ|1|S2|C|534
7QIZ|1|S2|U|535
Current chains
- Chain S2
- 18S
Nearby chains
- Chain GA
- 40S body ribosomal protein uS4
- Chain KA
- 40S ribosomal protein S24
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