HL_7QIZ_086

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

UGCUCAAAG

Length

9 nucleotides

Bulged bases

7QIZ|1|S2|G|769

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QIZ_086 not in the Motif Atlas

Geometric match to HL_4V88_203

Geometric discrepancy: 0.1714

The information below is about HL_4V88_203

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

7QIZ|1|S2|U|768
7QIZ|1|S2|G|769
7QIZ|1|S2|C|770
7QIZ|1|S2|U|771
7QIZ|1|S2|C|772
7QIZ|1|S2|A|773
7QIZ|1|S2|A|774
7QIZ|1|S2|A|775
7QIZ|1|S2|G|776

Current chains

Chain S2

18S

Nearby chains

Chain GA

40S body ribosomal protein uS4

Chain KA

40S ribosomal protein S24

Chain w

40S ribosomal protein S4