HL_7QIZ_087

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

CCUACG

Length

6 nucleotides

Bulged bases

7QIZ|1|S2|C|785

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QIZ_087 not in the Motif Atlas

Geometric match to HL_7A0S_007

Geometric discrepancy: 0.3844

The information below is about HL_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_51020.2

Basepair signature

cWW-cSW-F

Number of instances in this motif group

14

Unit IDs

7QIZ|1|S2|C|781
7QIZ|1|S2|C|782
7QIZ|1|S2|U|783
7QIZ|1|S2|A|784
7QIZ|1|S2|C|785
7QIZ|1|S2|G|786

Current chains

Chain S2

18S

Nearby chains

Chain GA

40S body ribosomal protein uS4

Chain KA

40S ribosomal protein S24

Chain w

40S ribosomal protein S4