HL_7QIZ_089

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

GAGGUGAAAU(PSU)C

Length

12 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7QIZ|1|S2|G|902
7QIZ|1|S2|A|903
7QIZ|1|S2|G|904
7QIZ|1|S2|G|905
7QIZ|1|S2|U|906
7QIZ|1|S2|G|907
7QIZ|1|S2|A|908
7QIZ|1|S2|A|909
7QIZ|1|S2|A|910
7QIZ|1|S2|U|911
7QIZ|1|S2|PSU|912
7QIZ|1|S2|C|913

Current chains

Chain S2

18S

Nearby chains

Chain 2

Large subunit ribosomal RNA; LSU rRNA

Chain IA

Ribosomal protein S14