HL_7QIZ_100

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

CUUUUAG

Length

7 nucleotides

Bulged bases

7QIZ|1|S2|U|1404

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QIZ_100 not in the Motif Atlas

Geometric match to HL_1U6B_001

Geometric discrepancy: 0.2285

The information below is about HL_1U6B_001

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

7QIZ|1|S2|C|1401
7QIZ|1|S2|U|1402
7QIZ|1|S2|U|1403
7QIZ|1|S2|U|1404
7QIZ|1|S2|U|1405
7QIZ|1|S2|A|1406
7QIZ|1|S2|G|1407

Current chains

Chain S2

18S

Nearby chains

Chain AA

40S ribosomal protein S17