HL_7QIZ_101

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

CGACAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QIZ_101 not in the Motif Atlas

Geometric match to HL_1RLG_002

Geometric discrepancy: 0.0972

The information below is about HL_1RLG_002

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

7QIZ|1|S2|C|1508
7QIZ|1|S2|G|1509
7QIZ|1|S2|A|1510
7QIZ|1|S2|C|1511
7QIZ|1|S2|A|1512
7QIZ|1|S2|G|1513

Current chains

Chain S2

18S

Nearby chains

Chain QA

40S ribosomal protein uS19

Chain TA

40S ribosomal protein uS13

Chain UA

40S ribosomal protein eS19