HL_7QIZ_102

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

CAUUGCAAUUGU(PSU)G

Length

14 nucleotides

Bulged bases

7QIZ|1|S2|U|1563, 7QIZ|1|S2|U|1564, 7QIZ|1|S2|G|1565

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7QIZ|1|S2|C|1555
7QIZ|1|S2|A|1556
7QIZ|1|S2|U|1557
7QIZ|1|S2|U|1558
7QIZ|1|S2|G|1559
7QIZ|1|S2|C|1560
7QIZ|1|S2|A|1561
7QIZ|1|S2|A|1562
7QIZ|1|S2|U|1563
7QIZ|1|S2|U|1564
7QIZ|1|S2|G|1565
7QIZ|1|S2|U|1566
7QIZ|1|S2|PSU|1567
7QIZ|1|S2|G|1568

Current chains

Chain S2

18S

Nearby chains

Chain QA

40S ribosomal protein uS19

Chain TA

40S ribosomal protein uS13

Chain UA

40S ribosomal protein eS19

Chain XA

40S ribosomal protein uS14