HL_7QIZ_103
3D structure
- PDB id
- 7QIZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Specific features and methylation sites of a plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- GUCAUCAGC
- Length
- 9 nucleotides
- Bulged bases
- 7QIZ|1|S2|G|1607
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7QIZ_103 not in the Motif Atlas
- Geometric match to HL_4V88_220
- Geometric discrepancy: 0.1676
- The information below is about HL_4V88_220
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_01927.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
7QIZ|1|S2|G|1600
7QIZ|1|S2|U|1601
7QIZ|1|S2|C|1602
7QIZ|1|S2|A|1603
7QIZ|1|S2|U|1604
7QIZ|1|S2|C|1605
7QIZ|1|S2|A|1606
7QIZ|1|S2|G|1607
7QIZ|1|S2|C|1608
Current chains
- Chain S2
- 18S
Nearby chains
- Chain RA
- 40S ribosomal protein uS9
- Chain UA
- 40S ribosomal protein eS19
- Chain VA
- Ribosomal_S10 domain-containing protein
- Chain XA
- 40S ribosomal protein uS14
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