HL_7QIZ_108

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

AGUUAUCUUUU

Length

11 nucleotides

Bulged bases

7QIZ|1|2|U|1691

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QIZ_108 not in the Motif Atlas

Geometric match to HL_6JXM_001

Geometric discrepancy: 0.3357

The information below is about HL_6JXM_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20490.1

Basepair signature

cWW-cWS-F

Number of instances in this motif group

13

Unit IDs

7QIZ|1|2|A|1683
7QIZ|1|2|G|1684
7QIZ|1|2|U|1685
7QIZ|1|2|U|1686
7QIZ|1|2|A|1687
7QIZ|1|2|U|1688
7QIZ|1|2|C|1689
7QIZ|1|2|U|1690
7QIZ|1|2|U|1691
7QIZ|1|2|U|1692
7QIZ|1|2|U|1693

Current chains

Chain 2

25S rRNA

Nearby chains

Chain T

Ribosomal protein L19

Chain W

60S ribosomal protein eL22