HL_7QIZ_112

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

(PSU)GAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QIZ_112 not in the Motif Atlas

Homologous match to HL_8C3A_060

Geometric discrepancy: 0.2678

The information below is about HL_8C3A_060

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7QIZ|1|2|PSU|2748
7QIZ|1|2|G|2749
7QIZ|1|2|A|2750
7QIZ|1|2|A|2751
7QIZ|1|2|A|2752
7QIZ|1|2|G|2753

Current chains

Chain 2

25S rRNA

Nearby chains

Chain G

Ribosomal_L18_c domain-containing protein

Chain V

60S ribosomal protein eL21

Chain p

60S ribosomal protein eL42