HL_7QP6_005

3D structure

PDB id

7QP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 48S initiation complex in open state (h48S AUG open)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GGUGACUC

Length

8 nucleotides

Bulged bases

7QP6|1|A|U|294

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QP6_005 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.1899

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.2

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

7QP6|1|A|G|288
7QP6|1|A|G|289
7QP6|1|A|U|290
7QP6|1|A|G|291
7QP6|1|A|A|292
7QP6|1|A|C|293
7QP6|1|A|U|294
7QP6|1|A|C|295

Current chains

Chain A

18S rRNA

Nearby chains

Chain B

40S ribosomal protein S11

Chain C

40S ribosomal protein S4, X isoform

Chain S

40S ribosomal protein S6