RNA 3D Hub //

7QP6 Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_7QP6_0011/A/7:17No text annotation
geometric
HL_4V88_186
NA
HL_7QP6_0021/A/69:80No text annotation
geometric
HL_2ZZM_002
HL_13963.3
HL_7QP6_0031/A/156:162GNRA related
geometric
HL_4V88_188
NA
HL_7QP6_0041/A/195:204No text annotation
HL_7QP6_0051/A/288:295No text annotation
geometric
HL_5NFV_001
HL_69752.2
HL_7QP6_0061/A/322:329No text annotation
geometric
HL_4V88_198
NA
HL_7QP6_0071/A/377:387No text annotation
HL_7QP6_0081/A/416:421No text annotation
geometric
HL_4V88_194
NA
HL_7QP6_0091/A/441:452No text annotation
geometric
HL_4V88_195
NA
HL_7QP6_0101/A/462:467UNCG
geometric
HL_4V88_196
NA
HL_7QP6_0111/A/498:504No text annotation
geometric
HL_5NFV_001
HL_69752.2
HL_7QP6_0121/A/539:544No text annotation
HL_7QP6_0131/A/569:581No text annotation
geometric
HL_4V88_199
NA
HL_7QP6_0141/A/618:623GNRA variation
geometric
HL_4V88_200
NA
HL_7QP6_0171/A/820:828No text annotation
homologous
HL_8C3A_208
NA
HL_7QP6_0181/A/833:841No text annotation
HL_7QP6_0191/A/885:901No text annotation
HL_7QP6_0201/A/957:966No text annotation
geometric
HL_5J7L_015
HL_75293.5
HL_7QP6_0211/A/994:999No text annotation
geometric
HL_5U3G_001
HL_75660.5
HL_7QP6_0221/A/1054:1064No text annotation
geometric
HL_5J7L_017
HL_75293.5
HL_7QP6_0231/A/1112:1121No text annotation
HL_7QP6_0241/A/1141:1146GNRA
geometric
HL_4V88_210
NA
HL_7QP6_0251/A/1178:1183GNRA
geometric
HL_4V9F_023
HL_37824.8
HL_7QP6_0261/A/1245:1254No text annotation
geometric
HL_4V88_212
NA
HL_7QP6_0271/A/1295:1304Anticodon loop related
geometric
HL_4V88_213
NA
HL_7QP6_0281/A/1353:1358GNRA
geometric
HL_2Z75_004
HL_37824.8
HL_7QP6_0291/A/1366:1373T-loop related
geometric
HL_4LFB_025
HL_77436.5
HL_7QP6_0301/A/1416:1424No text annotation
homologous
HL_8C3A_221
NA
HL_7QP6_0311/A/1460:1466GNRA
geometric
HL_3V7E_003
HL_37824.8
HL_7QP6_0321/A/1565:1570GNRA
geometric
HL_6UFG_004
HL_37824.8
HL_7QP6_0331/A/1614:1625No text annotation
geometric
HL_4V88_219
NA
HL_7QP6_0341/A/1658:1666No text annotation
geometric
HL_4V88_220
NA
HL_7QP6_0361/A/1847:1852GNRA variation
geometric
HL_4V88_222
NA
HL_7QP6_0371/w/13:21No text annotation
HL_7QP6_0381/w/30:38Anticodon loop related
geometric
HL_5T83_002
HL_06059.7
HL_7QP6_0391/w/51:61No text annotation

Problematic loops

#loop idProblemSequence
HL_7QP6_015Mini UNCG
HL_7QP6_016No text annotation
HL_7QP6_035No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_7QP6_0011/A/23:25,
1/A/649:651		Isolated non-canonical cWW pair
geometric
IL_3MEI_002
IL_87907.2
IL_7QP6_0031/A/34:36,
1/A/519:521		Isolated non-canonical cWW pair
geometric
IL_6IA2_002
IL_87907.2
IL_7QP6_0041/A/37:40,
1/A/514:518		Double sheared
geometric
IL_4WF9_016
IL_09705.15
IL_7QP6_0051/A/41:47,
1/A/479:481		No text annotation
geometric
IL_4V88_387
NA
IL_7QP6_0061/A/49:51,
1/A/476:477		Minor groove platform
geometric
IL_4V88_388
NA
IL_7QP6_0071/A/57:62,
1/A/86:88		No text annotation
geometric
IL_4V88_389
NA
IL_7QP6_0081/A/63:68,
1/A/81:85		No text annotation
geometric
IL_4V88_390
NA
IL_7QP6_0091/A/108:110,
1/A/351:353		Isolated non-canonical cWW pair
geometric
IL_4TS2_004
IL_28037.2
IL_7QP6_0101/A/110:112,
1/A/349:351		Isolated non-canonical cWW pair
geometric
IL_4WF9_042
IL_87907.2
IL_7QP6_0921/A/110:115,
1/A/348:351		Tandem non-canonical cWW pairs
homologous
IL_8P9A_380
IL_77658.1
IL_7QP6_0111/A/112:115,
1/A/348:349		Multiple bulged bases
geometric
IL_4V88_392
NA
IL_7QP6_0931/A/116:121,
1/A/343:347		No text annotation
homologous
IL_8P9A_382
IL_29223.1
IL_7QP6_0941/A/145:151,
1/A/167:174		No text annotation
homologous
IL_8C3A_402
NA
IL_7QP6_0951/A/152:154,
1/A/164:166		No text annotation
homologous
IL_8P9A_384
IL_44465.1
IL_7QP6_0161/A/188:192,
1/A/207:211		Double sheared with non-canonical cWW
geometric
IL_4WFL_001
IL_17948.2
IL_7QP6_0171/A/216:219,
1/A/302:309		No text annotation
IL_7QP6_0191/A/312:314,
1/A/336:337		Single bulged A
geometric
IL_4V88_399
NA
IL_7QP6_0201/A/317:319,
1/A/332:333		No text annotation
IL_7QP6_0211/A/359:364,
1/A/396:403		Kink-turn with non-sequential stacking
geometric
IL_4V88_402
NA
IL_7QP6_0221/A/366:371,
1/A/393:394		No text annotation
geometric
IL_5Y58_001
IL_59877.1
IL_7QP6_0231/A/411:413,
1/A/424:429		No text annotation
geometric
IL_4V88_404
NA
IL_7QP6_0241/A/437:439,
1/A/454:456		Isolated cWH basepair
geometric
IL_4V88_405
NA
IL_7QP6_0251/A/459:461,
1/A/468:470		Isolated near basepair
geometric
IL_3NJ7_004
IL_42997.3
IL_7QP6_0261/A/487:489,
1/A/511:512		Single bulged U
geometric
IL_4V88_407
NA
IL_7QP6_1041/A/491:495,
1/A/508:509		C-loop
homologous
IL_8P9A_397
IL_03109.3
IL_7QP6_1051/A/495:496,
1/A/506:508		Single bulged G
homologous
IL_8P9A_398
IL_00225.14
IL_7QP6_0281/A/527:534,
1/A/549:558		No text annotation
IL_7QP6_0291/A/535:537,
1/A/546:548		No text annotation
IL_7QP6_0301/A/563:565,
1/A/585:592		No text annotation
homologous
IL_8C3A_420
NA
IL_7QP6_0311/A/566:569,
1/A/581:584		Tandem non-canonical cWW pairs
geometric
IL_6JDV_001
IL_77658.1
IL_7QP6_0321/A/599:606,
1/A/636:637		SSU/LSU pseudoknot
geometric
IL_4V88_413
NA
IL_7QP6_0331/A/606:608,
1/A/635:636		Single bulged U
geometric
IL_5TBW_093
NA
IL_7QP6_0341/A/611:617,
1/A/624:632		Kink-turn related
geometric
IL_4V88_415
NA
IL_7QP6_0351/A/663:665,
1/A/1162:1164		Isolated non-canonical cWW pair
geometric
IL_1Y27_001
IL_87907.2
IL_7QP6_0361/A/665:671,
1/A/1161:1162		No text annotation
geometric
IL_4LFB_022
IL_38186.6
IL_7QP6_0371/A/673:675,
1/A/1030:1032		Isolated non-canonical cWW pair
geometric
IL_1Z7F_002
NA
IL_7QP6_0381/A/676:680,
1/A/1025:1029		tSH-tHW-tHS
geometric
IL_4V88_418
NA
IL_7QP6_0391/A/692:696,
1/A/734:738		No text annotation
IL_7QP6_0401/A/802:803,
1/A/860:863		Major groove minor groove platform; mini C-loop
geometric
IL_4V88_423
NA
IL_7QP6_0411/A/805:807,
1/A/856:858		Isolated non-canonical cWW pair
geometric
IL_5TBW_115
NA
IL_7QP6_0421/A/807:815,
1/A/849:856		No text annotation
geometric
IL_4V88_425
NA
IL_7QP6_0431/A/874:876,
1/A/910:912		Isolated non-canonical cWW pair
geometric
IL_5TBW_079
NA
IL_7QP6_0441/A/877:879,
1/A/907:909		Isolated non-canonical cWW pair
geometric
IL_4LFB_006
IL_87907.2
IL_7QP6_0451/A/922:923,
1/A/1019:1022		Major groove platform; stack outside cWW
geometric
IL_6N5P_003
IL_50694.7
IL_7QP6_0971/A/925:926,
1/A/1015:1017		Single bulged U
geometric
IL_8C3A_056
NA
IL_7QP6_0981/A/928:931,
1/A/1010:1013		Tandem non-canonical cWW pairs
homologous
IL_8P9A_419
IL_85033.2
IL_7QP6_0481/A/931:935,
1/A/1007:1010		Tandem non-canonical cWW pairs
geometric
IL_4V88_431
NA
IL_7QP6_0491/A/942:945,
1/A/981:984		Tandem non-canonical cWW pairs
geometric
IL_4V88_432
NA
IL_7QP6_0501/A/952:956,
1/A/967:974		Kink-turn
geometric
IL_4V88_434
NA
IL_7QP6_0511/A/1042:1047,
1/A/1071:1073		Other IL
geometric
IL_4V88_435
NA
IL_7QP6_0521/A/1047:1051,
1/A/1067:1071		tSH-tHW-tHS
geometric
IL_5J7L_037
IL_17136.7
IL_7QP6_0531/A/1091:1093,
1/A/1152:1158		No text annotation
geometric
IL_4V88_437
NA
IL_7QP6_0541/A/1098:1101,
1/A/1131:1134		Tandem non-canonical cWW pairs
geometric
IL_4V88_438
NA
IL_7QP6_0551/A/1101:1103,
1/A/1129:1131		Isolated non-canonical cWW pair
geometric
IL_4V9F_105
IL_87907.2
IL_7QP6_0561/A/1108:1110,
1/A/1123:1124		Minor groove platform
geometric
IL_4V88_412
NA
IL_7QP6_0571/A/1168:1175,
1/A/1186:1191		8x6 Sarcin-Ricin with inserted Y; G-bulge
geometric
IL_4V88_440
NA
IL_7QP6_0581/A/1203:1204,
1/A/1694:1696		Single bulged A
geometric
IL_5J7L_039
IL_31462.7
IL_7QP6_0591/A/1206:1208,
1/A/1691:1692		Single bulged G
geometric
IL_6CZR_148
NA
IL_7QP6_0601/A/1214:1217,
1/A/1681:1685		C-loop
geometric
IL_4V88_443
NA
IL_7QP6_0611/A/1230:1232,
1/A/1526:1528		Isolated non-canonical cWW pair
geometric
IL_4V88_444
NA
IL_7QP6_0991/A/1235:1236,
1/A/1521:1523		Minor groove platform
homologous
IL_8P9A_433
IL_51454.3
IL_7QP6_0631/A/1270:1272,
1/A/1510:1512		No text annotation
geometric
IL_1L9A_003
NA
IL_7QP6_1061/A/1282:1287,
1/A/1314:1315		No text annotation
IL_7QP6_1071/A/1282:1290,
1/A/1309:1315		No text annotation
IL_7QP6_0651/A/1287:1290,
1/A/1309:1314		No text annotation
IL_7QP6_0661/A/1291:1293,
1/A/1306:1308		Other IL
homologous
IL_8C3A_454
NA
IL_7QP6_0671/A/1325:1327,
1/A/1502:1503		Single bulged U
geometric
IL_4V88_449
NA
IL_7QP6_0681/A/1329:1333,
1/A/1498:1500		Isolated cWS basepair
geometric
IL_4LFB_044
IL_76319.5
IL_7QP6_1011/A/1329:1335,
1/A/1492:1500		No text annotation
homologous
IL_8P9A_439
IL_86012.1
IL_7QP6_0691/A/1333:1335,
1/A/1492:1498		Minor groove platform with extra cWW
geometric
IL_4V88_451
NA
IL_7QP6_0701/A/1337:1338,
1/A/1488:1490		Single bulged A
geometric
IL_4V88_452
NA
IL_7QP6_0711/A/1347:1349,
1/A/1380:1382		Isolated cWH basepair
geometric
IL_4V88_453
NA
IL_7QP6_1021/A/1363:1365,
1/A/1374:1375		Minor groove platform
homologous
IL_8C3A_460
NA
IL_7QP6_0731/A/1395:1399,
1/A/1447:1450		Tandem non-canonical cWW pairs
geometric
IL_5EW4_002
IL_85033.2
IL_7QP6_0741/A/1402:1405,
1/A/1441:1444		Minor groove platform
geometric
IL_4V88_456
NA
IL_7QP6_0751/A/1408:1409,
1/A/1432:1438		Multiple bulged bases
geometric
IL_1R3E_001
IL_84476.1
IL_7QP6_0761/A/1412:1413,
1/A/1427:1429		Single bulged G
geometric
IL_5J7L_019
IL_00225.14
IL_7QP6_0771/A/1537:1539,
1/A/1594:1596		Isolated non-canonical cWW pair
geometric
IL_5TBW_115
NA
IL_7QP6_1031/A/1541:1550,
1/A/1582:1592		No text annotation
IL_7QP6_0781/A/1550:1558,
1/A/1577:1582		180 degree turn
geometric
IL_5J7L_055
IL_11344.2
IL_7QP6_0791/A/1560:1562,
1/A/1573:1575		Isolated non-canonical cWW pair
geometric
IL_1YZ9_001
NA
IL_7QP6_0801/A/1604:1610,
1/A/1629:1635		No text annotation
homologous
IL_8C3A_469
NA
IL_7QP6_0811/A/1700:1702,
1/A/1833:1836		No text annotation
geometric
IL_5J7L_058
IL_61438.4
IL_7QP6_0821/A/1702:1705,
1/A/1829:1833		No text annotation
geometric
IL_4V88_464
NA
IL_7QP6_0831/A/1706:1708,
1/A/1826:1828		Isolated non-canonical cWW pair
geometric
IL_4V88_465
NA
IL_7QP6_0841/A/1708:1711,
1/A/1822:1826		Tandem non-canonical cWW pairs
geometric
IL_4V88_429
NA
IL_7QP6_0851/A/1714:1716,
1/A/1817:1819		Isolated non-canonical cWW pair
geometric
IL_4LFB_006
IL_87907.2
IL_7QP6_0861/A/1717:1720,
1/A/1813:1816		Double sheared
geometric
IL_4KZD_002
IL_09705.15
IL_7QP6_0871/A/1720:1722,
1/A/1812:1813		Single bulged U
homologous
IL_8C3A_476
NA
IL_7QP6_0881/A/1729:1731,
1/A/1803:1805		Isolated non-canonical cWW pair
geometric
IL_4PCJ_001
IL_28037.2
IL_7QP6_0891/A/1733:1736,
1/A/1798:1801		Double sheared
geometric
IL_4V88_471
NA
IL_7QP6_0901/A/1739:1741,
1/A/1793:1795		Isolated non-canonical cWW pair
geometric
IL_4E48_002
IL_87907.2
IL_7QP6_0911/A/1742:1746,
1/A/1788:1792		Triple sheared
geometric
IL_7RQB_075
NA

Problematic loops

#loop idProblemSequence
IL_7QP6_002Isolated non-canonical cWW pair
IL_7QP6_012No text annotation
IL_7QP6_013No text annotation
IL_7QP6_014No text annotation
IL_7QP6_015Tandem non-canonical cWW pairs
IL_7QP6_018No text annotation
IL_7QP6_027No text annotation
IL_7QP6_096C-loop with extra cWW pair
IL_7QP6_046Tandem non-canonical cWW pairs
IL_7QP6_047No text annotation
IL_7QP6_062Other IL
IL_7QP6_064No text annotation
IL_7QP6_100No text annotation
IL_7QP6_072Minor groove platform with extra cWW

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_7QP6_0011/A/40:41,
1/A/481:487,
1/A/512:514		No text annotation
homologous
J3_8P9A_068
J3_67856.4
J3_7QP6_0021/A/682:685,
1/A/917:922,
1/A/1022:1023		No text annotation
J3_7QP6_0141/A/682:685,
1/A/917:923,
1/A/1019:1023		No text annotation
J3_7QP6_0031/A/816:819,
1/A/829:831,
1/A/843:848		No text annotation
homologous
J3_8C3A_035
NA
J3_7QP6_0041/A/938:941,
1/A/985:993,
1/A/1000:1004		No text annotation
homologous
J3_8P9A_074
J3_76375.1
J3_7QP6_0051/A/1094:1096,
1/A/1136:1140,
1/A/1147:1151		No text annotation
J3_7QP6_0061/A/1218:1221,
1/A/1645:1651,
1/A/1673:1680		No text annotation
homologous
J3_8C3A_038
NA
J3_7QP6_0071/A/1225:1228,
1/A/1530:1532,
1/A/1638:1641		No text annotation
homologous
J3_8C3A_039
NA
J3_7QP6_0081/A/1237:1244,
1/A/1255:1266,
1/A/1516:1520		No text annotation
homologous
J3_8C3A_040
NA
J3_7QP6_0091/A/1272:1277,
1/A/1320:1324,
1/A/1504:1510		No text annotation
homologous
J3_8C3A_041
NA
J3_7QP6_0101/A/1340:1345,
1/A/1384:1389,
1/A/1481:1486		No text annotation
homologous
J3_8P9A_080
J3_99563.1
J3_7QP6_0111/A/1350:1351,
1/A/1360:1363,
1/A/1375:1379		No text annotation
homologous
J3_8C3A_085
NA
J3_7QP6_0121/A/1391:1395,
1/A/1450:1456,
1/A/1470:1479		No text annotation
J3_7QP6_0131/A/1532:1536,
1/A/1597:1604,
1/A/1635:1638		No text annotation
homologous
J3_8C3A_044
NA
J4_7QP6_0011/A/98:106,
1/A/355:357,
1/A/405:409,
1/A/431:432		No text annotation
homologous
J4_8P9A_021
J4_15241.1
J4_7QP6_0021/A/671:673,
1/A/1032:1037,
1/A/1078:1089,
1/A/1160:1161		No text annotation
homologous
J4_8P9A_022
J4_61885.6
J4_7QP6_0031/w/7:11,
1/w/23:26,
1/w/42:48,
1/w/64:65		No text annotation
J5_7QP6_0011/A/30:34,
1/A/521:527,
1/A/558:563,
1/A/592:595,
1/A/641:644		No text annotation
homologous
J5_8C3A_018
NA
J5_7QP6_0021/A/30:34,
1/A/521:527,
1/A/558:565,
1/A/585:595,
1/A/641:644		No text annotation
J5_7QP6_0031/A/53:56,
1/A/89:96,
1/A/434:436,
1/A/457:459,
1/A/470:474		No text annotation
homologous
J5_8C3A_020
NA
J5_7QP6_0041/A/123:129,
1/A/183:185,
1/A/214:215,
1/A/310:312,
1/A/337:341		No text annotation

Problematic loops

No problematic loops


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