RNA 3D Hub //

7QP6 Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_7QP6_0011/A/7:17No text annotation
geometric
HL_4V88_186
NA
HL_7QP6_0031/A/156:162GNRA related
geometric
HL_4V88_188
NA
HL_7QP6_0051/A/288:295No text annotation
geometric
HL_5NFV_001
HL_69752.4
HL_7QP6_0091/A/441:452No text annotation
geometric
HL_4V88_195
NA
HL_7QP6_0101/A/462:467UNCG
geometric
HL_4V88_196
NA
HL_7QP6_0141/A/618:623GNRA variation
geometric
HL_4V88_200
NA
HL_7QP6_0171/A/820:828No text annotation
homologous
HL_8C3A_208
NA
HL_7QP6_0201/A/957:966No text annotation
geometric
HL_5J7L_015
NA
HL_7QP6_0211/A/994:999No text annotation
geometric
HL_5U3G_001
HL_75660.7
HL_7QP6_0221/A/1054:1064No text annotation
geometric
HL_5J7L_017
NA
HL_7QP6_0241/A/1141:1146GNRA
geometric
HL_4V88_210
NA
HL_7QP6_0251/A/1178:1183GNRA
geometric
HL_4V9F_023
HL_34789.4
HL_7QP6_0261/A/1245:1254No text annotation
geometric
HL_4V88_212
NA
HL_7QP6_0331/A/1614:1625No text annotation
geometric
HL_4V88_219
NA
HL_7QP6_0381/w/30:38Anticodon loop related
geometric
HL_5T83_002
HL_81376.3

Problematic loops

#loop idProblemSequence
HL_7QP6_002No text annotation
HL_7QP6_004No text annotation
HL_7QP6_006No text annotation
HL_7QP6_007No text annotation
HL_7QP6_008No text annotation
HL_7QP6_011No text annotation
HL_7QP6_012No text annotation
HL_7QP6_013No text annotation
HL_7QP6_015Mini UNCG
HL_7QP6_016No text annotation
HL_7QP6_018No text annotation
HL_7QP6_019No text annotation
HL_7QP6_023No text annotation
HL_7QP6_027Anticodon loop related
HL_7QP6_028GNRA
HL_7QP6_029T-loop related
HL_7QP6_030No text annotation
HL_7QP6_031GNRA
HL_7QP6_032GNRA
HL_7QP6_034No text annotation
HL_7QP6_035No text annotation
HL_7QP6_036GNRA variation
HL_7QP6_037No text annotation
HL_7QP6_039No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_7QP6_0041/A/37:40,
1/A/514:518		Double sheared
geometric
IL_4WF9_016
IL_58355.2
IL_7QP6_0051/A/41:47,
1/A/479:481		No text annotation
geometric
IL_4V88_387
NA
IL_7QP6_0091/A/108:110,
1/A/351:353		Isolated non-canonical cWW pair
geometric
IL_4TS2_004
IL_71625.3
IL_7QP6_0101/A/110:112,
1/A/349:351		Isolated non-canonical cWW pair
geometric
IL_4WF9_042
IL_01003.4
IL_7QP6_0921/A/110:115,
1/A/348:351		Tandem non-canonical cWW pairs
homologous
IL_8P9A_380
IL_71194.2
IL_7QP6_0111/A/112:115,
1/A/348:349		Multiple bulged bases
geometric
IL_4V88_392
NA
IL_7QP6_0931/A/116:121,
1/A/343:347		No text annotation
homologous
IL_8P9A_382
IL_31545.1
IL_7QP6_0941/A/145:151,
1/A/167:174		No text annotation
homologous
IL_8C3A_402
NA
IL_7QP6_0211/A/359:364,
1/A/396:403		Kink-turn with non-sequential stacking
geometric
IL_4V88_402
NA
IL_7QP6_0221/A/366:371,
1/A/393:394		No text annotation
geometric
IL_5Y58_001
IL_37738.1
IL_7QP6_0231/A/411:413,
1/A/424:429		No text annotation
geometric
IL_4V88_404
NA
IL_7QP6_0261/A/487:489,
1/A/511:512		Single bulged U
geometric
IL_4V88_407
NA
IL_7QP6_1041/A/491:495,
1/A/508:509		C-loop
homologous
IL_8P9A_397
IL_26900.1
IL_7QP6_1051/A/495:496,
1/A/506:508		Single bulged G
homologous
IL_8P9A_398
IL_28408.2
IL_7QP6_0301/A/563:565,
1/A/585:592		No text annotation
homologous
IL_8C3A_420
NA
IL_7QP6_0311/A/566:569,
1/A/581:584		Tandem non-canonical cWW pairs
geometric
IL_6JDV_001
IL_71194.2
IL_7QP6_0321/A/599:606,
1/A/636:637		SSU/LSU pseudoknot
geometric
IL_4V88_413
NA
IL_7QP6_0341/A/611:617,
1/A/624:632		Kink-turn related
geometric
IL_4V88_415
NA
IL_7QP6_0351/A/663:665,
1/A/1162:1164		Isolated non-canonical cWW pair
geometric
IL_1Y27_001
IL_01003.4
IL_7QP6_0361/A/665:671,
1/A/1161:1162		No text annotation
geometric
IL_4LFB_022
IL_20847.1
IL_7QP6_0371/A/673:675,
1/A/1030:1032		Isolated non-canonical cWW pair
geometric
IL_1Z7F_002
NA
IL_7QP6_0401/A/802:803,
1/A/860:863		Major groove minor groove platform; mini C-loop
geometric
IL_4V88_423
NA
IL_7QP6_0971/A/925:926,
1/A/1015:1017		Single bulged U
geometric
IL_8C3A_056
NA
IL_7QP6_0481/A/931:935,
1/A/1007:1010		Tandem non-canonical cWW pairs
geometric
IL_4V88_431
NA
IL_7QP6_0491/A/942:945,
1/A/981:984		Tandem non-canonical cWW pairs
geometric
IL_4V88_432
NA
IL_7QP6_0531/A/1091:1093,
1/A/1152:1158		No text annotation
geometric
IL_4V88_437
NA
IL_7QP6_0571/A/1168:1175,
1/A/1186:1191		8x6 Sarcin-Ricin with inserted Y; G-bulge
geometric
IL_4V88_440
NA
IL_7QP6_0581/A/1203:1204,
1/A/1694:1696		Single bulged A
geometric
IL_5J7L_039
NA
IL_7QP6_0601/A/1214:1217,
1/A/1681:1685		C-loop
geometric
IL_4V88_443
NA
IL_7QP6_0611/A/1230:1232,
1/A/1526:1528		Isolated non-canonical cWW pair
geometric
IL_4V88_444
NA
IL_7QP6_1011/A/1329:1335,
1/A/1492:1500		No text annotation
homologous
IL_8P9A_439
IL_99893.1
IL_7QP6_0691/A/1333:1335,
1/A/1492:1498		Minor groove platform with extra cWW
geometric
IL_4V88_451
NA
IL_7QP6_0701/A/1337:1338,
1/A/1488:1490		Single bulged A
geometric
IL_4V88_452
NA
IL_7QP6_0711/A/1347:1349,
1/A/1380:1382		Isolated cWH basepair
geometric
IL_4V88_453
NA
IL_7QP6_1031/A/1541:1550,
1/A/1582:1592		No text annotation
IL_7QP6_0781/A/1550:1558,
1/A/1577:1582		180 degree turn
geometric
IL_5J7L_055
NA
IL_7QP6_0811/A/1700:1702,
1/A/1833:1836		No text annotation
geometric
IL_5J7L_058
NA
IL_7QP6_0821/A/1702:1705,
1/A/1829:1833		No text annotation
geometric
IL_4V88_464
NA
IL_7QP6_0831/A/1706:1708,
1/A/1826:1828		Isolated non-canonical cWW pair
geometric
IL_4V88_465
NA
IL_7QP6_0841/A/1708:1711,
1/A/1822:1826		Tandem non-canonical cWW pairs
geometric
IL_4V88_429
NA
IL_7QP6_0891/A/1733:1736,
1/A/1798:1801		Double sheared
geometric
IL_4V88_471
NA

Problematic loops

#loop idProblemSequence
IL_7QP6_001Isolated non-canonical cWW pair
IL_7QP6_002Isolated non-canonical cWW pair
IL_7QP6_003Isolated non-canonical cWW pair
IL_7QP6_006Minor groove platform
IL_7QP6_007No text annotation
IL_7QP6_008No text annotation
IL_7QP6_012No text annotation
IL_7QP6_013No text annotation
IL_7QP6_014No text annotation
IL_7QP6_015Tandem non-canonical cWW pairs
IL_7QP6_095No text annotation
IL_7QP6_016Double sheared with non-canonical cWW
IL_7QP6_017No text annotation
IL_7QP6_018No text annotation
IL_7QP6_019Single bulged A
IL_7QP6_020No text annotation
IL_7QP6_024Isolated cWH basepair
IL_7QP6_025Isolated near basepair
IL_7QP6_027No text annotation
IL_7QP6_096C-loop with extra cWW pair
IL_7QP6_028No text annotation
IL_7QP6_029No text annotation
IL_7QP6_033Single bulged U
IL_7QP6_038tSH-tHW-tHS
IL_7QP6_039No text annotation
IL_7QP6_041Isolated non-canonical cWW pair
IL_7QP6_042No text annotation
IL_7QP6_043Isolated non-canonical cWW pair
IL_7QP6_044Isolated non-canonical cWW pair
IL_7QP6_045Major groove platform; stack outside cWW
IL_7QP6_046Tandem non-canonical cWW pairs
IL_7QP6_047No text annotation
IL_7QP6_098Tandem non-canonical cWW pairs
IL_7QP6_050Kink-turn
IL_7QP6_051Other IL
IL_7QP6_052tSH-tHW-tHS
IL_7QP6_054Tandem non-canonical cWW pairs
IL_7QP6_055Isolated non-canonical cWW pair
IL_7QP6_056Minor groove platform
IL_7QP6_059Single bulged G
IL_7QP6_062Other IL
IL_7QP6_099Minor groove platform
IL_7QP6_063No text annotation
IL_7QP6_064No text annotation
IL_7QP6_100No text annotation
IL_7QP6_106No text annotation
IL_7QP6_107No text annotation
IL_7QP6_065No text annotation
IL_7QP6_066Other IL
IL_7QP6_067Single bulged U
IL_7QP6_068Isolated cWS basepair
IL_7QP6_102Minor groove platform
IL_7QP6_072Minor groove platform with extra cWW
IL_7QP6_073Tandem non-canonical cWW pairs
IL_7QP6_074Minor groove platform
IL_7QP6_075Multiple bulged bases
IL_7QP6_076Single bulged G
IL_7QP6_077Isolated non-canonical cWW pair
IL_7QP6_079Isolated non-canonical cWW pair
IL_7QP6_080No text annotation
IL_7QP6_085Isolated non-canonical cWW pair
IL_7QP6_086Double sheared
IL_7QP6_087Single bulged U
IL_7QP6_088Isolated non-canonical cWW pair
IL_7QP6_090Isolated non-canonical cWW pair
IL_7QP6_091Triple sheared

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_7QP6_0021/A/682:685,
1/A/917:922,
1/A/1022:1023		No text annotation
J3_7QP6_0141/A/682:685,
1/A/917:923,
1/A/1019:1023		No text annotation
J3_7QP6_0041/A/938:941,
1/A/985:993,
1/A/1000:1004		No text annotation
homologous
J3_8P9A_074
J3_23895.1
J3_7QP6_0051/A/1094:1096,
1/A/1136:1140,
1/A/1147:1151		No text annotation
J3_7QP6_0061/A/1218:1221,
1/A/1645:1651,
1/A/1673:1680		No text annotation
homologous
J3_8C3A_038
NA
J3_7QP6_0071/A/1225:1228,
1/A/1530:1532,
1/A/1638:1641		No text annotation
homologous
J3_8C3A_039
NA
J3_7QP6_0081/A/1237:1244,
1/A/1255:1266,
1/A/1516:1520		No text annotation
homologous
J3_8C3A_040
NA
J3_7QP6_0101/A/1340:1345,
1/A/1384:1389,
1/A/1481:1486		No text annotation
homologous
J3_8P9A_080
J3_17077.1
J3_7QP6_0121/A/1391:1395,
1/A/1450:1456,
1/A/1470:1479		No text annotation
J3_7QP6_0131/A/1532:1536,
1/A/1597:1604,
1/A/1635:1638		No text annotation
homologous
J3_8C3A_044
NA
J4_7QP6_0011/A/98:106,
1/A/355:357,
1/A/405:409,
1/A/431:432		No text annotation
homologous
J4_8P9A_021
J4_15241.2
J4_7QP6_0021/A/671:673,
1/A/1032:1037,
1/A/1078:1089,
1/A/1160:1161		No text annotation
homologous
J4_8P9A_022
J4_14595.1
J5_7QP6_0011/A/30:34,
1/A/521:527,
1/A/558:563,
1/A/592:595,
1/A/641:644		No text annotation
homologous
J5_8C3A_018
NA
J5_7QP6_0021/A/30:34,
1/A/521:527,
1/A/558:565,
1/A/585:595,
1/A/641:644		No text annotation
J5_7QP6_0031/A/53:56,
1/A/89:96,
1/A/434:436,
1/A/457:459,
1/A/470:474		No text annotation
homologous
J5_8C3A_020
NA
J5_7QP6_0041/A/123:129,
1/A/183:185,
1/A/214:215,
1/A/310:312,
1/A/337:341		No text annotation

Problematic loops

#loop idProblemSequence
J3_7QP6_001No text annotation
J3_7QP6_003No text annotation
J3_7QP6_009No text annotation
J3_7QP6_011No text annotation
J4_7QP6_003No text annotation

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