HL_7QP6_015

3D structure

PDB id

7QP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 48S initiation complex in open state (h48S AUG open)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GGCC

Length

4 nucleotides

Bulged bases

7QP6|1|A|C|733

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QP6_015 not in the Motif Atlas

Geometric match to HL_7A0S_039

Geometric discrepancy: 0.3777

The information below is about HL_7A0S_039

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.3

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

7QP6|1|A|G|696
7QP6|1|A|G|697
7QP6|1|A|C|733
7QP6|1|A|C|734

Current chains

Chain A

18S rRNA

Nearby chains

Chain G

40S ribosomal protein S7