HL_7QP6_025

3D structure

PDB id

7QP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 48S initiation complex in open state (h48S AUG open)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

UGCAAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QP6_025 not in the Motif Atlas

Geometric match to HL_4V9F_023

Geometric discrepancy: 0.0885

The information below is about HL_4V9F_023

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

7QP6|1|A|U|1178
7QP6|1|A|G|1179
7QP6|1|A|C|1180
7QP6|1|A|A|1181
7QP6|1|A|A|1182
7QP6|1|A|A|1183

Current chains

Chain A

18S rRNA

Nearby chains

Chain 9

60S ribosomal protein L41

Chain y

Eukaryotic translation initiation factor 3 subunit C