HL_7QP6_032

3D structure

PDB id

7QP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 48S initiation complex in open state (h48S AUG open)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CGGCAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QP6_032 not in the Motif Atlas

Geometric match to HL_6UFG_004

Geometric discrepancy: 0.1392

The information below is about HL_6UFG_004

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

7QP6|1|A|C|1565
7QP6|1|A|G|1566
7QP6|1|A|G|1567
7QP6|1|A|C|1568
7QP6|1|A|A|1569
7QP6|1|A|G|1570

Current chains

Chain A

18S rRNA

Nearby chains

Chain b

40S ribosomal protein S15

Chain d

40S ribosomal protein S19

Chain f

40S ribosomal protein S18