HL_7QP7_006

3D structure

PDB id

7QP7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 48S initiation complex in closed state (h48S AUG closed)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CCCCCGUG

Length

8 nucleotides

Bulged bases

7QP7|1|A|C|324, 7QP7|1|A|C|325

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QP7_006 not in the Motif Atlas

Geometric match to HL_4V88_198

Geometric discrepancy: 0.339

The information below is about HL_4V88_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

7QP7|1|A|C|322
7QP7|1|A|C|323
7QP7|1|A|C|324
7QP7|1|A|C|325
7QP7|1|A|C|326
7QP7|1|A|G|327
7QP7|1|A|U|328
7QP7|1|A|G|329

Current chains

Chain A

18S rRNA

Nearby chains

Chain S

40S ribosomal protein S6