HL_7QP7_012

3D structure

PDB id

7QP7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 48S initiation complex in closed state (h48S AUG closed)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUUUCG

Length

6 nucleotides

Bulged bases

7QP7|1|A|U|541, 7QP7|1|A|U|542

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QP7_012 not in the Motif Atlas

Geometric match to HL_5TBW_022

Geometric discrepancy: 0.3885

The information below is about HL_5TBW_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

7QP7|1|A|C|539
7QP7|1|A|U|540
7QP7|1|A|U|541
7QP7|1|A|U|542
7QP7|1|A|C|543
7QP7|1|A|G|544

Current chains

Chain A

18S rRNA

Nearby chains

Chain o

Eukaryotic translation initiation factor 3 subunit G