HL_7QQ3_043

3D structure

PDB id

7QQ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the E.coli 50S ribosomal subunit in complex with the antibiotic Myxovalargin A.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

CCUCGCG

Length

7 nucleotides

Bulged bases

7QQ3|1|I|U|1729, 7QQ3|1|I|C|1732

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QQ3_043 not in the Motif Atlas

Geometric match to HL_4WRT_001

Geometric discrepancy: 0.3835

The information below is about HL_4WRT_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_49922.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

11

Unit IDs

7QQ3|1|I|C|1727
7QQ3|1|I|C|1728
7QQ3|1|I|U|1729
7QQ3|1|I|C|1730
7QQ3|1|I|G|1731
7QQ3|1|I|C|1732
7QQ3|1|I|G|1733

Current chains

Chain I

23S ribosomal RNA

Nearby chains