HL_7QQ3_048

3D structure

PDB id

7QQ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the E.coli 50S ribosomal subunit in complex with the antibiotic Myxovalargin A.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

G(PSU)AACUA(PSU)AAC

Length

11 nucleotides

Bulged bases

7QQ3|1|I|A|1913

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QQ3_048 not in the Motif Atlas

Homologous match to HL_5J7L_181

Geometric discrepancy: 0.1069

The information below is about HL_5J7L_181

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_25847.2

Basepair signature

cWW-F-cSH-tHW-F-F-F

Number of instances in this motif group

3

Unit IDs

7QQ3|1|I|G|1910
7QQ3|1|I|PSU|1911
7QQ3|1|I|A|1912
7QQ3|1|I|A|1913
7QQ3|1|I|C|1914
7QQ3|1|I|U|1915
7QQ3|1|I|A|1916
7QQ3|1|I|PSU|1917
7QQ3|1|I|A|1918
7QQ3|1|I|A|1919
7QQ3|1|I|C|1920

Current chains

Chain I

23S ribosomal RNA

Nearby chains