HL_7QQ3_053

3D structure

PDB id

7QQ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the E.coli 50S ribosomal subunit in complex with the antibiotic Myxovalargin A.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

CUG(OMG)GGCGG

Length

9 nucleotides

Bulged bases

7QQ3|1|I|G|2250

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QQ3_053 not in the Motif Atlas

Homologous match to HL_4WF9_049

Geometric discrepancy: 0.0792

The information below is about HL_4WF9_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11974.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

17

Unit IDs

7QQ3|1|I|C|2248
7QQ3|1|I|U|2249
7QQ3|1|I|G|2250
7QQ3|1|I|OMG|2251
7QQ3|1|I|G|2252
7QQ3|1|I|G|2253
7QQ3|1|I|C|2254
7QQ3|1|I|G|2255
7QQ3|1|I|G|2256

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain U

50S ribosomal protein L16

Chain e

50S ribosomal protein L27