HL_7QQ3_054

3D structure

PDB id

7QQ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the E.coli 50S ribosomal subunit in complex with the antibiotic Myxovalargin A.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

CUAAAGAGUAACG

Length

13 nucleotides

Bulged bases

7QQ3|1|I|A|2268, 7QQ3|1|I|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QQ3_054 not in the Motif Atlas

Homologous match to HL_5J7L_187

Geometric discrepancy: 0.0595

The information below is about HL_5J7L_187

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91939.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

8

Unit IDs

7QQ3|1|I|C|2264
7QQ3|1|I|U|2265
7QQ3|1|I|A|2266
7QQ3|1|I|A|2267
7QQ3|1|I|A|2268
7QQ3|1|I|G|2269
7QQ3|1|I|A|2270
7QQ3|1|I|G|2271
7QQ3|1|I|U|2272
7QQ3|1|I|A|2273
7QQ3|1|I|A|2274
7QQ3|1|I|C|2275
7QQ3|1|I|G|2276

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain U

50S ribosomal protein L16

Chain e

50S ribosomal protein L27