HL_7QQ3_066

3D structure

PDB id

7QQ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the E.coli 50S ribosomal subunit in complex with the antibiotic Myxovalargin A.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

7QQ3|1|I|G|2751, 7QQ3|1|I|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QQ3_066 not in the Motif Atlas

Homologous match to HL_5J7L_199

Geometric discrepancy: 0.0615

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

7QQ3|1|I|C|2745
7QQ3|1|I|U|2746
7QQ3|1|I|G|2747
7QQ3|1|I|A|2748
7QQ3|1|I|A|2749
7QQ3|1|I|A|2750
7QQ3|1|I|G|2751
7QQ3|1|I|C|2752
7QQ3|1|I|A|2753
7QQ3|1|I|U|2754
7QQ3|1|I|C|2755
7QQ3|1|I|U|2756
7QQ3|1|I|A|2757
7QQ3|1|I|A|2758
7QQ3|1|I|G|2759

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain O

50S ribosomal protein L6

Chain R

50S ribosomal protein L13

Chain m

50S ribosomal protein L36