3D structure

PDB id
7QQ3 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the E.coli 50S ribosomal subunit in complex with the antibiotic Myxovalargin A.
Experimental method
ELECTRON MICROSCOPY
Resolution
2.1 Å

Loop

Sequence
(PSU)GCUAACG
Length
8 nucleotides
Bulged bases
7QQ3|1|I|U|958, 7QQ3|1|I|C|961
QA status
Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7QQ3_072 not in the Motif Atlas
Homologous match to HL_5J7L_211
Geometric discrepancy: 0.3946
The information below is about HL_5J7L_211
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_37824.8
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
352

Unit IDs

7QQ3|1|I|PSU|955
7QQ3|1|I|G|956
7QQ3|1|I|C|957
7QQ3|1|I|U|958
7QQ3|1|I|A|959
7QQ3|1|I|A|960
7QQ3|1|I|C|961
7QQ3|1|I|G|962

Current chains

Chain I
23S ribosomal RNA

Nearby chains

Chain J
5S ribosomal RNA; 5S rRNA
Chain U
50S ribosomal protein L16

Coloring options:


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