HL_7QR3_005

3D structure

PDB id

7QR3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimpanzee CPEB3 HDV-like ribozyme

Experimental method

X-RAY DIFFRACTION

Resolution

2.18 Å

Loop

Sequence

GUUCACGUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QR3_005 not in the Motif Atlas

Geometric match to HL_7QR3_001

Geometric discrepancy: 0.1021

The information below is about HL_7QR3_001

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_81376.1

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

29

Unit IDs

7QR3|1|D|G|19
7QR3|1|D|U|20
7QR3|1|D|U|21
7QR3|1|D|C|22
7QR3|1|D|A|23
7QR3|1|D|C|24
7QR3|1|D|G|25
7QR3|1|D|U|26
7QR3|1|D|C|27

Current chains

Chain D

chimpanzee CPEB3 ribozyme

Nearby chains

Chain C

Mammalian CPEB3 ribozyme