HL_7QTT_002
3D structure
- PDB id
- 7QTT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structural organization of a late activated human spliceosome (Baqr, core region)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UGCGCAA
- Length
- 7 nucleotides
- Bulged bases
- 7QTT|1|d|C|68
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7QTT_002 not in the Motif Atlas
- Homologous match to HL_5VSU_001
- Geometric discrepancy: 0.5514
- The information below is about HL_5VSU_001
- Detailed Annotation
- GNRA variation
- Broad Annotation
- GNRA variation
- Motif group
- HL_34789.1
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 335
Unit IDs
7QTT|1|d|U|64
7QTT|1|d|G|65
7QTT|1|d|C|66
7QTT|1|d|G|67
7QTT|1|d|C|68
7QTT|1|d|A|69
7QTT|1|d|A|70
Current chains
- Chain d
- U6snRNA
Nearby chains
- Chain I
- Splicing factor 3A subunit 2
- Chain O
- Pleiotropic regulator 1
- Chain Q
- Spliceosome-associated protein CWC15 homolog
- Chain Y
- SNW domain-containing protein 1
- Chain a
- Pre-mRNA-processing-splicing factor 8
- Chain e
- U5 spliceosomal RNA; U5 snRNA
- Chain g
- MINX
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