HL_7QV3_060

3D structure

PDB id

7QV3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis MutS2-collided disome complex (MutS2 conf.2; Leading 70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

5.14 Å

Loop

Sequence

UGUAAAGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QV3_060 not in the Motif Atlas

Homologous match to HL_4WF9_052

Geometric discrepancy: 0.1982

The information below is about HL_4WF9_052

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_52651.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

29

Unit IDs

7QV3|1|V|U|2353
7QV3|1|V|G|2354
7QV3|1|V|U|2355
7QV3|1|V|A|2356
7QV3|1|V|A|2357
7QV3|1|V|A|2358
7QV3|1|V|G|2359
7QV3|1|V|G|2360

Current chains

Chain V

23S ribosomal RNA

Nearby chains

Chain H

Transfer RNA; tRNA

Chain M

50S ribosomal protein L16

Chain W

50S ribosomal protein L27