7QV3 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_7QV3_011 | 1/V/197:204 | No text annotation | geometric HL_7RQB_006 NA | |
| HL_7QV3_013 | 1/V/249:255 | No text annotation | homologous HL_5J7L_141 NA | |
| HL_7QV3_017 | 1/V/371:379 | T-loop with unstacked turn | homologous HL_5J7L_144 NA | |
| HL_7QV3_018 | 1/V/429:439 | No text annotation | homologous HL_5J7L_145 NA | |
| HL_7QV3_020 | 1/V/509:514 | GNRA | homologous HL_4WF9_015 HL_34789.4 | |
| HL_7QV3_021 | 1/V/534:539 | GNRA | homologous HL_7RQB_016 NA | |
| HL_7QV3_022 | 1/V/588:595 | No text annotation | homologous HL_4WF9_017 HL_50318.1 | |
| HL_7QV3_023 | 1/V/610:619 | No text annotation | homologous HL_7RQB_018 NA | |
| HL_7QV3_028 | 1/V/791:800 | No text annotation | homologous HL_4WF9_023 HL_50204.1 | |
| HL_7QV3_029 | 1/V/826:832 | No text annotation | geometric HL_5U3G_001 HL_75660.8 | |
| HL_7QV3_030 | 1/V/873:878 | No text annotation | homologous HL_7RQB_025 NA | |
| HL_7QV3_032 | 1/V/1001:1008 | GNRA | homologous HL_7A0S_026 HL_34789.4 | |
| HL_7QV3_033 | 1/V/1024:1031 | No text annotation | homologous HL_7A0S_027 HL_47171.1 | |
| HL_7QV3_036 | 1/V/1262:1267 | GNRA | homologous HL_7A0S_031 HL_34789.4 | |
| HL_7QV3_037 | 1/V/1320:1328 | T-loop with 2 stacked bulged bases | homologous HL_7A0S_032 HL_33597.3 | |
| HL_7QV3_038 | 1/V/1363:1369 | Pseudoknot geometry with 3' bulge | homologous HL_4WF9_033 HL_49081.1 | |
| HL_7QV3_039 | 1/V/1402:1407 | GNRA | homologous HL_5J7L_167 NA | |
| HL_7QV3_040 | 1/V/1428:1437 | No text annotation | homologous HL_4WF9_035 HL_77449.1 | |
| HL_7QV3_044 | 1/V/1657:1664 | No text annotation | homologous HL_7RQB_040 NA | |
| HL_7QV3_045 | 1/V/1675:1681 | GNRA | homologous HL_5J7L_174 NA | |
| HL_7QV3_049 | 1/V/1806:1816 | No text annotation | homologous HL_4WF9_043 HL_87681.1 | |
| HL_7QV3_050 | 1/V/1835:1840 | No text annotation | homologous HL_4WF9_044 NA | |
| HL_7QV3_053 | 1/V/1978:1986 | No text annotation | homologous HL_5J7L_182 NA | |
| HL_7QV3_054 | 1/V/2056:2065 | No text annotation | homologous HL_4WF9_047 HL_78372.1 | |
| HL_7QV3_057 | 1/V/2277:2285 | No text annotation | homologous HL_7A0S_052 HL_11974.2 | |
| HL_7QV3_061 | 1/V/2384:2391 | GNRA with extra cWW | homologous HL_4WF9_053 HL_87268.2 | |
| HL_7QV3_066 | 1/V/2580:2586 | No text annotation | homologous HL_4WF9_058 HL_48677.1 | |
| HL_7QV3_067 | 1/V/2623:2628 | GNRA | homologous HL_7A0S_062 HL_34789.4 | |
| HL_7QV3_072 | 1/V/2844:2852 | No text annotation | homologous HL_5J7L_201 NA | |
| HL_7QV3_089 | 1/a/735:740 | GNRA | homologous HL_4LFB_016 HL_34789.4 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_7QV3_001 | No text annotation | ||
| HL_7QV3_002 | Mini UNCG | ||
| HL_7QV3_003 | tRNA D-loop | ||
| HL_7QV3_004 | tRNA anticodon loop | ||
| HL_7QV3_005 | T-loop with 2 stacked bulged bases | ||
| HL_7QV3_006 | No text annotation | ||
| HL_7QV3_007 | Pseudoknot geometry | ||
| HL_7QV3_008 | No text annotation | ||
| HL_7QV3_009 | GNRA wlth tandem sheared | ||
| HL_7QV3_010 | No text annotation | ||
| HL_7QV3_012 | No text annotation | ||
| HL_7QV3_014 | No text annotation | ||
| HL_7QV3_108 | No text annotation | ||
| HL_7QV3_015 | T-loop with 1 bulged base | ||
| HL_7QV3_016 | No text annotation | ||
| HL_7QV3_019 | Pseudoknot geometry | ||
| HL_7QV3_024 | GNRA | ||
| HL_7QV3_025 | GNRA | ||
| HL_7QV3_026 | No text annotation | ||
| HL_7QV3_027 | GNRA wlth tandem sheared | ||
| HL_7QV3_031 | No text annotation | ||
| HL_7QV3_034 | No text annotation | ||
| HL_7QV3_035 | GNRA related | ||
| HL_7QV3_041 | No text annotation | ||
| HL_7QV3_042 | Pseudoknot geometry with 3' bulge | ||
| HL_7QV3_043 | No text annotation | ||
| HL_7QV3_046 | No text annotation | ||
| HL_7QV3_047 | No text annotation | ||
| HL_7QV3_048 | No text annotation | ||
| HL_7QV3_051 | No text annotation | ||
| HL_7QV3_052 | No text annotation | ||
| HL_7QV3_109 | No text annotation | ||
| HL_7QV3_055 | No text annotation | ||
| HL_7QV3_056 | No text annotation | ||
| HL_7QV3_058 | No text annotation | ||
| HL_7QV3_059 | No text annotation | ||
| HL_7QV3_106 | No text annotation | ||
| HL_7QV3_060 | Pseudoknot geometry | ||
| HL_7QV3_062 | GNRA | ||
| HL_7QV3_063 | No text annotation | ||
| HL_7QV3_064 | No text annotation | ||
| HL_7QV3_065 | GNRA variation | ||
| HL_7QV3_107 | No text annotation | ||
| HL_7QV3_068 | GNRA | ||
| HL_7QV3_069 | Ribsomal LSU H95 | ||
| HL_7QV3_070 | No text annotation | ||
| HL_7QV3_071 | No text annotation | ||
| HL_7QV3_073 | GNRA | ||
| HL_7QV3_074 | No text annotation | ||
| HL_7QV3_075 | Externally structured | ||
| HL_7QV3_076 | GNRA | ||
| HL_7QV3_077 | No text annotation | ||
| HL_7QV3_078 | UNCG | ||
| HL_7QV3_079 | GNRA related | ||
| HL_7QV3_080 | GNRA | ||
| HL_7QV3_081 | No text annotation | ||
| HL_7QV3_082 | UNCG | ||
| HL_7QV3_083 | GNRA | ||
| HL_7QV3_084 | UNCG | ||
| HL_7QV3_085 | GNRA | ||
| HL_7QV3_086 | No text annotation | ||
| HL_7QV3_087 | GNRA-like with tWH | ||
| HL_7QV3_088 | No text annotation | ||
| HL_7QV3_090 | No text annotation | ||
| HL_7QV3_091 | Externally structured | ||
| HL_7QV3_092 | GNRA | ||
| HL_7QV3_093 | GNRA | ||
| HL_7QV3_094 | No text annotation | ||
| HL_7QV3_095 | GNRA | ||
| HL_7QV3_096 | No text annotation | ||
| HL_7QV3_097 | GNRA | ||
| HL_7QV3_098 | T-loop related | ||
| HL_7QV3_099 | T-loop related | ||
| HL_7QV3_100 | GNRA | ||
| HL_7QV3_101 | GNRA | ||
| HL_7QV3_102 | T-loop with 3 stacked bulged bases | ||
| HL_7QV3_103 | No text annotation | ||
| HL_7QV3_104 | No text annotation | ||
| HL_7QV3_105 | GNRA |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_7QV3_007 | 1/V/24:30, 1/V/556:562 | Triple sheared with non-canonical cWW | homologous IL_4WF9_001 IL_22311.1 | |
| IL_7QV3_009 | 1/V/43:44, 1/V/481:483 | Minor groove platform | homologous IL_5J7L_247 NA | |
| IL_7QV3_184 | 1/V/56:76, 1/V/109:113 | No text annotation | geometric IL_5TBW_144 NA | |
| IL_7QV3_011 | 1/V/152:153, 1/V/175:177 | Single bulged A | homologous IL_4WF9_006 IL_14190.2 | |
| IL_7QV3_013 | 1/V/191:197, 1/V/204:211 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_7A0S_006 IL_62167.3 | |
| IL_7QV3_018 | 1/V/528:531, 1/V/542:555 | No text annotation | homologous IL_4WF9_015 IL_44923.1 | |
| IL_7QV3_019 | 1/V/582:586, 1/V/597:601 | Double sheared with near cWW | geometric IL_7A0S_056 IL_87767.2 | |
| IL_7QV3_020 | 1/V/608:610, 1/V/619:621 | Isolated non-canonical cWW pair | geometric IL_5VCI_002 IL_01003.4 | |
| IL_7QV3_021 | 1/V/639:641, 1/V/707:709 | Isolated non-canonical cWW pair | homologous IL_4WF9_018 IL_71625.3 | |
| IL_7QV3_023 | 1/V/719:721, 1/V/853:855 | No text annotation | homologous IL_7RQB_017 NA | |
| IL_7QV3_024 | 1/V/721:725, 1/V/846:853 | tHW-tHW cross-strand stack | geometric IL_7RQB_018 NA | |
| IL_7QV3_025 | 1/V/744:745, 1/V/810:812 | Single bulged A | geometric IL_7A0S_016 IL_14190.2 | |
| IL_7QV3_029 | 1/V/822:824, 1/V/834:838 | Multiple bulged bases | geometric IL_5J7L_265 NA | |
| IL_7QV3_030 | 1/V/884:885, 1/V/986:988 | Single stack bend | homologous IL_7A0S_022 IL_15011.3 | |
| IL_7QV3_031 | 1/V/891:895, 1/V/977:980 | No text annotation | homologous IL_4WF9_029 IL_01742.1 | |
| IL_7QV3_038 | 1/V/998:1000, 1/V/1009:1011 | Isolated non-canonical cWW pair | homologous IL_7A0S_031 IL_01003.4 | |
| IL_7QV3_039 | 1/V/1040:1042, 1/V/1205:1206 | Single bulged C | homologous IL_7RQB_035 NA | |
| IL_7QV3_041 | 1/V/1050:1057, 1/V/1196:1197 | SSU/LSU pseudoknot | geometric IL_5J7L_278 NA | |
| IL_7QV3_044 | 1/V/1070:1076, 1/V/1170:1186 | No text annotation | geometric IL_4WF9_040 IL_50715.4 | |
| IL_7QV3_186 | 1/V/1238:1239, 1/V/1287:1289 | No text annotation | ||
| IL_7QV3_050 | 1/V/1243:1247, 1/V/1279:1283 | No text annotation | ||
| IL_7QV3_053 | 1/V/1302:1309, 1/V/2040:2046 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_7RQB_049 NA | |
| IL_7QV3_187 | 1/V/1390:1394, 1/V/1415:1419 | UAA/GAN | homologous IL_7A0S_048 IL_89021.4 | |
| IL_7QV3_057 | 1/V/1392:1394, 1/V/1415:1418 | No text annotation | ||
| IL_7QV3_058 | 1/V/1396:1400, 1/V/1409:1413 | tSH-tHW-tHS | homologous IL_5J7L_293 NA | |
| IL_7QV3_070 | 1/V/1696:1701, 1/V/2033:2035 | No text annotation | homologous IL_4WF9_062 IL_12566.5 | |
| IL_7QV3_071 | 1/V/1708:1710, 1/V/2024:2026 | Isolated tWW turn | homologous IL_4WF9_063 IL_10432.1 | |
| IL_7QV3_072 | 1/V/1711:1714, 1/V/2022:2023 | Major groove platform; stack outside cWW | geometric IL_5TBW_076 NA | |
| IL_7QV3_190 | 1/V/1711:1719, 1/V/2019:2023 | No text annotation | homologous IL_4WF9_117 IL_80252.1 | |
| IL_7QV3_073 | 1/V/1714:1719, 1/V/2019:2022 | Intercalated tWH | homologous IL_4WF9_065 IL_28217.1 | |
| IL_7QV3_074 | 1/V/1731:1736, 1/V/1741:1747 | tSH-tSH-tHH-tHS | geometric IL_7RQB_068 NA | |
| IL_7QV3_076 | 1/V/1799:1800, 1/V/2009:2011 | Single bulged A | homologous IL_5J7L_312 NA | |
| IL_7QV3_077 | 1/V/1827:1833, 1/V/1842:1850 | Kink-turn related | homologous IL_7A0S_065 IL_17069.6 | |
| IL_7QV3_086 | 1/V/2079:2081, 1/V/2646:2647 | Major groove platform | homologous IL_5J7L_320 NA | |
| IL_7QV3_087 | 1/V/2083:2085, 1/V/2641:2644 | No text annotation | homologous IL_5J7L_321 NA | |
| IL_7QV3_088 | 1/V/2096:2098, 1/V/2471:2472 | Single bulged U | homologous IL_7RQB_080 NA | |
| IL_7QV3_089 | 1/V/2099:2100, 1/V/2467:2470 | Minor groove platform | homologous IL_7RQB_081 NA | |
| IL_7QV3_091 | 1/V/2123:2126, 1/V/2222:2224 | No text annotation | geometric IL_4N0T_004 IL_32983.2 | |
| IL_7QV3_096 | 1/V/2230:2233, 1/V/2249:2251 | Isolated non-canonical cWW pair | geometric IL_3TD0_005 NA | |
| IL_7QV3_099 | 1/V/2430:2432, 1/V/2443:2444 | Single bulged U | homologous IL_5J7L_334 NA | |
| IL_7QV3_103 | 1/V/2488:2490, 1/V/2518:2522 | Major groove minor groove platform with extra cWW | homologous IL_7RQB_094 NA | |
| IL_7QV3_105 | 1/V/2536:2537, 1/V/2609:2611 | Major groove platform | homologous IL_4WF9_094 IL_46637.2 | |
| IL_7QV3_106 | 1/V/2539:2541, 1/V/2603:2607 | Isolated non-canonical cWW with bulges | geometric IL_4WF9_095 IL_68118.4 | |
| IL_7QV3_107 | 1/V/2541:2542, 1/V/2600:2603 | Multiple bulged bases | homologous IL_7RQB_098 NA | |
| IL_7QV3_110 | 1/V/2665:2669, 1/V/2803:2811 | tSH-tHS-tHW | homologous IL_7RQB_102 NA | |
| IL_7QV3_112 | 1/V/2709:2713, 1/V/2754:2756 | C-loop | homologous IL_5J7L_347 NA | |
| IL_7QV3_113 | 1/V/2716:2720, 1/V/2747:2751 | UAA/GAN related, with intercalation | homologous IL_4WF9_102 IL_82016.1 | |
| IL_7QV3_114 | 1/V/2724:2725, 1/V/2740:2743 | Multiple bulged bases | homologous IL_7A0S_097 IL_44609.2 | |
| IL_7QV3_118 | 1/V/2872:2877, 1/V/2890:2894 | tHS double platform | homologous IL_4WF9_108 IL_48489.1 | |
| IL_7QV3_152 | 1/a/783:787, 1/a/813:814 | Left turn | homologous IL_4LFB_032 IL_29346.3 | |
| IL_7QV3_155 | 1/a/932:933, 1/a/1402:1404 | Single bulged A | homologous IL_5J7L_039 NA | |
| IL_7QV3_173 | 1/a/1408:1410, 1/a/1511:1514 | No text annotation | geometric IL_5J7L_058 NA | |
| IL_7QV3_177 | 1/a/1421:1423, 1/a/1496:1498 | Isolated non-canonical cWW pair | homologous IL_5J7L_061 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_7QV3_001 | Major groove intercalation | ||
| IL_7QV3_002 | No text annotation | ||
| IL_7QV3_003 | Major groove minor groove platform; mini C-loop | ||
| IL_7QV3_004 | Symmetric double minor groove platform | ||
| IL_7QV3_005 | Bacterial 5S Loop E | ||
| IL_7QV3_006 | Isolated non-canonical cWW pair | ||
| IL_7QV3_008 | Single bulged A | ||
| IL_7QV3_010 | Kink-turn | ||
| IL_7QV3_012 | Single stack bend | ||
| IL_7QV3_014 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_7QV3_015 | Minor groove platform | ||
| IL_7QV3_016 | No text annotation | ||
| IL_7QV3_017 | Single bulged A | ||
| IL_7QV3_022 | AAA cross-strand stack | ||
| IL_7QV3_026 | Single bulged G | ||
| IL_7QV3_027 | Triple sheared | ||
| IL_7QV3_028 | Major groove platform | ||
| IL_7QV3_032 | No text annotation | ||
| IL_7QV3_033 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | ||
| IL_7QV3_034 | Minor groove platform | ||
| IL_7QV3_035 | C-loop | ||
| IL_7QV3_185 | Isolated cWS basepair | ||
| IL_7QV3_036 | Double sheared with non-canonical cWW | ||
| IL_7QV3_037 | No text annotation | ||
| IL_7QV3_040 | UAA/GAN | ||
| IL_7QV3_042 | Single bulged U | ||
| IL_7QV3_043 | Kink-turn related | ||
| IL_7QV3_045 | Isolated non-canonical cWW pair | ||
| IL_7QV3_046 | Kink-turn | ||
| IL_7QV3_047 | No text annotation | ||
| IL_7QV3_048 | Single stack bend | ||
| IL_7QV3_049 | Isolated cWS basepair | ||
| IL_7QV3_051 | Kink-turn | ||
| IL_7QV3_052 | Intercalated cWW | ||
| IL_7QV3_054 | Major groove platform; stack outside cWW | ||
| IL_7QV3_055 | Major groove minor groove platform with tHH | ||
| IL_7QV3_056 | Single stack bend | ||
| IL_7QV3_059 | Multiple bulged bases | ||
| IL_7QV3_060 | No text annotation | ||
| IL_7QV3_061 | Other IL | ||
| IL_7QV3_062 | No text annotation | ||
| IL_7QV3_063 | tSH-tHW-tHS | ||
| IL_7QV3_188 | No text annotation | ||
| IL_7QV3_064 | Major groove platform | ||
| IL_7QV3_065 | No text annotation | ||
| IL_7QV3_189 | No text annotation | ||
| IL_7QV3_066 | Double sheared | ||
| IL_7QV3_067 | No text annotation | ||
| IL_7QV3_068 | Single bulged A | ||
| IL_7QV3_069 | UAA/GAN variation | ||
| IL_7QV3_075 | No text annotation | ||
| IL_7QV3_078 | Minor groove platform, major groove intercalation | ||
| IL_7QV3_079 | Major groove intercalation | ||
| IL_7QV3_080 | Major groove minor groove platform; mini C-loop | ||
| IL_7QV3_081 | UAA/GAN with extra stack | ||
| IL_7QV3_082 | No text annotation | ||
| IL_7QV3_198 | Triple sheared | ||
| IL_7QV3_083 | UAA/GAN related | ||
| IL_7QV3_084 | Bulged stacked bases | ||
| IL_7QV3_085 | No text annotation | ||
| IL_7QV3_191 | No text annotation | ||
| IL_7QV3_090 | Isolated tHS basepair with bulges | ||
| IL_7QV3_192 | No text annotation | ||
| IL_7QV3_193 | No text annotation | ||
| IL_7QV3_092 | Tandem non-canonical cWW pairs | ||
| IL_7QV3_093 | No text annotation | ||
| IL_7QV3_094 | No text annotation | ||
| IL_7QV3_095 | Kink-turn | ||
| IL_7QV3_097 | Isolated tHS basepair with bulges | ||
| IL_7QV3_098 | Double sheared | ||
| IL_7QV3_100 | Single stack bend | ||
| IL_7QV3_101 | Major groove platform | ||
| IL_7QV3_102 | Major groove platform | ||
| IL_7QV3_104 | Double sheared with non-canonical cWW | ||
| IL_7QV3_108 | Major groove platform with intercalation | ||
| IL_7QV3_109 | Single bulged A | ||
| IL_7QV3_111 | Sarcin-Ricin target in LSU H95; G-bulge | ||
| IL_7QV3_115 | UAA/GAN with extra cWW | ||
| IL_7QV3_116 | Single bulged C | ||
| IL_7QV3_117 | No text annotation | ||
| IL_7QV3_194 | No text annotation | ||
| IL_7QV3_119 | Single bulged G | ||
| IL_7QV3_120 | Single bulged A | ||
| IL_7QV3_121 | No text annotation | ||
| IL_7QV3_122 | Minor groove platform | ||
| IL_7QV3_123 | Multiple bulged bases | ||
| IL_7QV3_124 | No text annotation | ||
| IL_7QV3_195 | No text annotation | ||
| IL_7QV3_125 | No text annotation | ||
| IL_7QV3_196 | No text annotation | ||
| IL_7QV3_126 | No text annotation | ||
| IL_7QV3_127 | Multiple bulged bases | ||
| IL_7QV3_128 | No text annotation | ||
| IL_7QV3_129 | tWH-tWH-tHW-tHW | ||
| IL_7QV3_130 | Kink-turn with non-sequential stacking | ||
| IL_7QV3_131 | No text annotation | ||
| IL_7QV3_132 | C-loop | ||
| IL_7QV3_133 | Single bulged U | ||
| IL_7QV3_134 | C-loop | ||
| IL_7QV3_135 | Single bulged G | ||
| IL_7QV3_136 | No text annotation | ||
| IL_7QV3_137 | 6x5 Sarcin-Ricin; G-bulge | ||
| IL_7QV3_138 | No text annotation | ||
| IL_7QV3_139 | SSU/LSU pseudoknot | ||
| IL_7QV3_140 | Kink-turn related | ||
| IL_7QV3_141 | No text annotation | ||
| IL_7QV3_142 | tSH-tHW-tHS | ||
| IL_7QV3_143 | Major groove platform | ||
| IL_7QV3_144 | Major groove minor groove platform; mini C-loop | ||
| IL_7QV3_145 | No text annotation | ||
| IL_7QV3_146 | No text annotation | ||
| IL_7QV3_147 | Major groove platform; stack outside cWW | ||
| IL_7QV3_148 | No text annotation | ||
| IL_7QV3_149 | Tandem non-canonical cWW pairs | ||
| IL_7QV3_197 | Triple non-canonical cWW pairs | ||
| IL_7QV3_150 | No text annotation | ||
| IL_7QV3_151 | Kink-turn | ||
| IL_7QV3_153 | tSH-tHW-tHS | ||
| IL_7QV3_154 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | ||
| IL_7QV3_156 | Single bulged G | ||
| IL_7QV3_157 | Minor groove platform | ||
| IL_7QV3_158 | No text annotation | ||
| IL_7QV3_159 | Minor groove platform | ||
| IL_7QV3_160 | Single stack bend | ||
| IL_7QV3_161 | Single bulged U | ||
| IL_7QV3_162 | Isolated cWS basepair | ||
| IL_7QV3_163 | Minor groove platform | ||
| IL_7QV3_164 | Single bulged A | ||
| IL_7QV3_165 | Isolated non-canonical cWW pair | ||
| IL_7QV3_166 | Minor groove platform | ||
| IL_7QV3_167 | Minor groove platform | ||
| IL_7QV3_168 | No text annotation | ||
| IL_7QV3_169 | No text annotation | ||
| IL_7QV3_170 | 180 degree turn | ||
| IL_7QV3_171 | Double sheared | ||
| IL_7QV3_172 | No text annotation | ||
| IL_7QV3_174 | No text annotation | ||
| IL_7QV3_175 | Isolated non-canonical cWW pair | ||
| IL_7QV3_176 | Stack and bulge | ||
| IL_7QV3_178 | Double sheared | ||
| IL_7QV3_179 | Tandem non-canonical cWW pairs | ||
| IL_7QV3_180 | Triple sheared related | ||
| IL_7QV3_181 | Isolated non-canonical cWW pair | ||
| IL_7QV3_182 | Isolated tHS basepair with bulges | ||
| IL_7QV3_183 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_7QV3_002 | 1/V/30:31, 1/V/521:528, 1/V/555:556 | No text annotation | homologous J3_5J7L_036 NA | |
| J3_7QV3_028 | 1/V/32:35, 1/V/492:508, 1/V/515:520 | No text annotation | homologous J3_9DFE_003 J3_07616.1 | |
| J3_7QV3_003 | 1/V/56:67, 1/V/74:76, 1/V/109:113 | No text annotation | homologous J3_4WF9_001 J3_47707.1 | |
| J3_7QV3_005 | 1/V/730:736, 1/V/820:822, 1/V/838:841 | No text annotation | homologous J3_5J7L_038 NA | |
| J3_7QV3_030 | 1/V/744:747, 1/V/779:783, 1/V/807:812 | No text annotation | geometric J3_5TBW_005 NA | |
| J3_7QV3_006 | 1/V/745:747, 1/V/779:783, 1/V/807:810 | No text annotation | homologous J3_7RQB_005 NA | |
| J3_7QV3_008 | 1/V/1337:1342, 1/V/1670:1672, 1/V/1684:1687 | No text annotation | homologous J3_7RQB_007 NA | |
| J3_7QV3_009 | 1/V/1344:1348, 1/V/1650:1656, 1/V/1665:1668 | No text annotation | homologous J3_4WF9_005 J3_68164.1 | |
| J3_7QV3_010 | 1/V/1383:1389, 1/V/1420:1424, 1/V/1441:1442 | No text annotation | homologous J3_7RQB_009 NA | |
| J3_7QV3_011 | 1/V/2120:2122, 1/V/2225:2230, 1/V/2251:2257 | No text annotation | homologous J3_4WF9_007 J3_07703.1 | |
| J3_7QV3_032 | 1/V/2311:2313, 1/V/2413:2424, 1/V/2450:2456 | No text annotation | homologous J3_5J7L_070 NA | |
| J3_7QV3_014 | 1/V/2838:2840, 1/V/2856:2861, 1/V/2907:2912 | No text annotation | ||
| J4_7QV3_002 | 1/V/271:272, 1/V/417:422, 1/V/446:453, 1/V/468:471 | No text annotation | homologous J4_4WF9_001 J4_94698.1 | |
| J4_7QV3_004 | 1/V/645:648, 1/V/670:674, 1/V/681:684, 1/V/696:703 | No text annotation | homologous J4_5J7L_020 NA | |
| J4_7QV3_005 | 1/V/1310:1315, 1/V/1333:1334, 1/V/1690:1694, 1/V/2037:2039 | No text annotation | ||
| J4_7QV3_006 | 1/V/1349:1353, 1/V/1377:1382, 1/V/1443:1444, 1/V/1642:1649 | No text annotation | homologous J4_9DFE_004 J4_77353.1 | |
| J4_7QV3_007 | 1/V/1352:1353, 1/V/1377:1382, 1/V/1443:1444, 1/V/1642:1648 | No text annotation | homologous J4_9DFE_005 J4_48150.1 | |
| J4_7QV3_009 | 1/V/1801:1805, 1/V/1817:1821, 1/V/1856:1859, 1/V/2004:2008 | No text annotation | homologous J4_5J7L_025 NA | |
| J4_7QV3_016 | 1/V/1862:1864, 1/V/1934:1935, 1/V/1953:1962, 1/V/1996:2001 | No text annotation | homologous J4_9DFE_008 J4_42306.1 | |
| J4_7QV3_011 | 1/V/2314:2318, 1/V/2372:2376, 1/V/2399:2401, 1/V/2410:2412 | No text annotation | homologous J4_9DFE_009 J4_98139.1 | |
| J4_7QV3_012 | 1/V/2672:2675, 1/V/2703:2705, 1/V/2760:2764, 1/V/2798:2800 | No text annotation | homologous J4_9DFE_010 J4_77044.5 | |
| J4_7QV3_015 | 1/a/584:586, 1/a/773:778, 1/a/819:830, 1/a/889:890 | No text annotation | homologous J4_4LFB_003 J4_14595.1 | |
| J5_7QV3_001 | 1/V/47:54, 1/V/115:120, 1/V/129:130, 1/V/149:151, 1/V/178:180 | No text annotation | homologous J5_5J7L_013 NA | |
| J5_7QV3_002 | 1/V/271:276, 1/V/295:302, 1/V/416:422, 1/V/446:453, 1/V/468:471 | No text annotation | ||
| J5_7QV3_003 | 1/V/577:579, 1/V/604:608, 1/V/621:623, 1/V/1301:1302, 1/V/2046:2047 | No text annotation | homologous J5_5J7L_014 NA | |
| J5_7QV3_004 | 1/V/628:633, 1/V/715:718, 1/V/856:859, 1/V/1236:1237, 1/V/1290:1296 | No text annotation | homologous J5_9DFE_004 J5_74302.6 | |
| J5_7QV3_005 | 1/V/1719:1727, 1/V/1751:1752, 1/V/1780:1781, 1/V/1785:1793, 1/V/2017:2019 | No text annotation | homologous J5_4WF9_005 J5_99177.1 | |
| J5_7QV3_006 | 1/V/2086:2093, 1/V/2475:2482, 1/V/2529:2536, 1/V/2611:2617, 1/V/2635:2640 | No text annotation | ||
| J5_7QV3_007 | 1/V/2103:2106, 1/V/2272:2275, 1/V/2287:2288, 1/V/2310:2311, 1/V/2456:2464 | No text annotation | homologous J5_7A0S_007 J5_39529.2 | |
| J6_7QV3_002 | 1/V/45:47, 1/V/180:186, 1/V/217:227, 1/V/234:238, 1/V/265:269, 1/V/473:480 | No text annotation | ||
| J7_7QV3_001 | 1/V/864:869, 1/V/882:883, 1/V/989:992, 1/V/1017:1022, 1/V/1033:1037, 1/V/1209:1210, 1/V/1226:1231 | No text annotation | ||
| J8_7QV3_001 | 1/V/8:15, 1/V/571:577, 1/V/2047:2052, 1/V/2069:2072, 1/V/2654:2659, 1/V/2817:2820, 1/V/2831:2836, 1/V/2914:2919 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_7QV3_001 | No text annotation | ||
| J3_7QV3_004 | No text annotation | ||
| J3_7QV3_029 | No text annotation | ||
| J3_7QV3_007 | No text annotation | ||
| J3_7QV3_031 | No text annotation | ||
| J3_7QV3_012 | No text annotation | ||
| J3_7QV3_013 | No text annotation | ||
| J3_7QV3_015 | No text annotation | ||
| J3_7QV3_033 | No text annotation | ||
| J3_7QV3_016 | No text annotation | ||
| J3_7QV3_034 | No text annotation | ||
| J3_7QV3_017 | No text annotation | ||
| J3_7QV3_018 | No text annotation | ||
| J3_7QV3_019 | No text annotation | ||
| J3_7QV3_020 | No text annotation | ||
| J3_7QV3_021 | No text annotation | ||
| J3_7QV3_022 | No text annotation | ||
| J3_7QV3_035 | No text annotation | ||
| J3_7QV3_023 | No text annotation | ||
| J3_7QV3_024 | No text annotation | ||
| J3_7QV3_036 | No text annotation | ||
| J3_7QV3_025 | No text annotation | ||
| J3_7QV3_026 | No text annotation | ||
| J3_7QV3_037 | No text annotation | ||
| J3_7QV3_039 | No text annotation | ||
| J3_7QV3_038 | No text annotation | ||
| J3_7QV3_027 | No text annotation | ||
| J4_7QV3_001 | tRNA junction | ||
| J4_7QV3_003 | No text annotation | ||
| J4_7QV3_008 | No text annotation | ||
| J4_7QV3_010 | No text annotation | ||
| J4_7QV3_013 | No text annotation | ||
| J4_7QV3_014 | No text annotation | ||
| J5_7QV3_008 | No text annotation | ||
| J5_7QV3_009 | No text annotation | ||
| J6_7QV3_001 | No text annotation |
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