HL_7QVP_001

3D structure

PDB id

7QVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human collided disome (di-ribosome) stalled on XBP1 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAGUCGGUAG

Length

10 nucleotides

Bulged bases

7QVP|1|B4|C|17, 7QVP|1|B4|G|18, 7QVP|1|B4|G|19

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QVP_001 not in the Motif Atlas

Geometric match to HL_6JXM_001

Geometric discrepancy: 0.1524

The information below is about HL_6JXM_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20490.1

Basepair signature

cWW-cWS-F

Number of instances in this motif group

13

Unit IDs

7QVP|1|B4|C|13
7QVP|1|B4|A|14
7QVP|1|B4|G|15
7QVP|1|B4|U|16
7QVP|1|B4|C|17
7QVP|1|B4|G|18
7QVP|1|B4|G|19
7QVP|1|B4|U|20
7QVP|1|B4|A|21
7QVP|1|B4|G|22

Current chains

Chain B4

tRNA P/P

Nearby chains

Chain L5

Large subunit ribosomal RNA; LSU rRNA

Chain LJ

60S ribosomal protein L11

Chain Lo

60S ribosomal protein L36a