7QVP Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_7QVP_001 | 1/B4/13:22 | tRNA D-loop | geometric HL_6JXM_001 HL_20490.1 | |
| HL_7QVP_002 | 1/B4/31:39 | tRNA anticodon loop | geometric HL_6UFG_007 HL_81376.2 | |
| HL_7QVP_003 | 1/B4/53:61 | T-loop with 2 stacked bulged bases | geometric HL_5WWT_002 HL_33597.2 | |
| HL_7QVP_005 | 1/B5/30:38 | tRNA anticodon loop | geometric HL_6UFG_007 HL_81376.2 | |
| HL_7QVP_011 | 1/D5/30:40 | No text annotation | homologous HL_4V7M_033 NA | |
| HL_7QVP_013 | 1/L1/47:56 | Pseudoknot with intercalation | geometric HL_4V9F_001 HL_17803.1 | |
| HL_7QVP_014 | 1/L1/68:90 | No text annotation | homologous HL_8C3A_075 NA | |
| HL_7QVP_015 | 1/L1/107:112 | UNCG variation | geometric HL_2CZJ_007 NA | |
| HL_7QVP_017 | 1/L5/37:44 | No text annotation | geometric HL_4V9F_006 HL_48677.1 | |
| HL_7QVP_018 | 1/L5/68:73 | No text annotation | homologous HL_8C3A_002 NA | |
| HL_7QVP_019 | 1/L5/89:95 | No text annotation | homologous HL_8C3A_003 NA | |
| HL_7QVP_021 | 1/L5/204:211 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_005 NA | |
| HL_7QVP_022 | 1/L5/222:226 | No text annotation | homologous HL_8C3A_006 NA | |
| HL_7QVP_023 | 1/L5/230:238 | T-loop with unstacked turn | homologous HL_8C3A_007 NA | |
| HL_7QVP_024 | 1/L5/289:298 | No text annotation | homologous HL_8C3A_008 NA | |
| HL_7QVP_025 | 1/L5/314:323 | Pseudoknot geometry | homologous HL_8C3A_009 NA | |
| HL_7QVP_026 | 1/L5/368:373 | GNRA | homologous HL_8C3A_010 NA | |
| HL_7QVP_027 | 1/L5/393:398 | GNRA | homologous HL_8C3A_011 NA | |
| HL_7QVP_250 | 1/L5/1171:1190 | No text annotation | ||
| HL_7QVP_031 | 1/L5/1174:1186 | No text annotation | ||
| HL_7QVP_033 | 1/L5/1317:1326 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_014 NA | |
| HL_7QVP_034 | 1/L5/1364:1373 | No text annotation | ||
| HL_7QVP_035 | 1/L5/1389:1394 | GNRA | homologous HL_8C3A_016 NA | |
| HL_7QVP_037 | 1/L5/1436:1448 | No text annotation | geometric HL_2Y8W_001 HL_40612.1 | |
| HL_7QVP_038 | 1/L5/1480:1484 | No text annotation | ||
| HL_7QVP_039 | 1/L5/1561:1566 | GNRA | homologous HL_8C3A_019 NA | |
| HL_7QVP_040 | 1/L5/1593:1602 | No text annotation | homologous HL_8C3A_020 NA | |
| HL_7QVP_041 | 1/L5/1627:1635 | No text annotation | homologous HL_8C3A_021 NA | |
| HL_7QVP_042 | 1/L5/1675:1680 | Externally structured | homologous HL_8C3A_022 NA | |
| HL_7QVP_044 | 1/L5/1816:1823 | T-loop related | geometric HL_3R4F_001 HL_63894.2 | |
| HL_7QVP_045 | 1/L5/1864:1870 | GNRA | homologous HL_8C3A_025 NA | |
| HL_7QVP_046 | 1/L5/1886:1893 | No text annotation | homologous HL_8C3A_026 NA | |
| HL_7QVP_048 | 1/L5/2257:2261 | Mini UNCG | geometric HL_4L8H_001 HL_90436.2 | |
| HL_7QVP_049 | 1/L5/2317:2322 | GNRA | homologous HL_8C3A_030 NA | |
| HL_7QVP_050 | 1/L5/2376:2384 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_031 NA | |
| HL_7QVP_051 | 1/L5/2420:2426 | Pseudoknot geometry with 3' bulge | homologous HL_8C3A_032 NA | |
| HL_7QVP_052 | 1/L5/2458:2463 | GNRA variation | homologous HL_8C3A_033 NA | |
| HL_7QVP_054 | 1/L5/2523:2532 | No text annotation | homologous HL_8C3A_035 NA | |
| HL_7QVP_056 | 1/L5/2578:2583 | GNRA | homologous HL_8C3A_036 NA | |
| HL_7QVP_057 | 1/L5/2624:2632 | No text annotation | homologous HL_8C3A_037 NA | |
| HL_7QVP_058 | 1/L5/2664:2670 | No text annotation | homologous HL_8C3A_038 NA | |
| HL_7QVP_059 | 1/L5/2704:2712 | No text annotation | geometric HL_2Y9H_005 HL_44506.2 | |
| HL_7QVP_060 | 1/L5/2738:2742 | No text annotation | homologous HL_8C3A_040 NA | |
| HL_7QVP_061 | 1/L5/2792:2799 | No text annotation | homologous HL_8C3A_041 NA | |
| HL_7QVP_062 | 1/L5/2810:2816 | GNRA | homologous HL_8C3A_042 NA | |
| HL_7QVP_063 | 1/L5/2872:2877 | UNCG | geometric HL_4V9F_044 HL_61337.2 | |
| HL_7QVP_065 | 1/L5/3614:3618 | No text annotation | homologous HL_8C3A_045 NA | |
| HL_7QVP_066 | 1/L5/3639:3649 | No text annotation | homologous HL_8C3A_046 NA | |
| HL_7QVP_067 | 1/L5/3668:3674 | GNRA variation | geometric HL_4QK9_001 HL_34789.2 | |
| HL_7QVP_068 | 1/L5/3724:3729 | GNRA | homologous HL_8C3A_048 NA | |
| HL_7QVP_069 | 1/L5/3757:3767 | No text annotation | homologous HL_8C3A_049 NA | |
| HL_7QVP_070 | 1/L5/3796:3804 | No text annotation | homologous HL_8C3A_050 NA | |
| HL_7QVP_071 | 1/L5/3873:3882 | No text annotation | homologous HL_8C3A_051 NA | |
| HL_7QVP_075 | 1/L5/4193:4201 | No text annotation | homologous HL_8C3A_055 NA | |
| HL_7QVP_076 | 1/L5/4210:4222 | No text annotation | homologous HL_8C3A_056 NA | |
| HL_7QVP_077 | 1/L5/4250:4258 | No text annotation | homologous HL_8C3A_057 NA | |
| HL_7QVP_078 | 1/L5/4270:4277 | Pseudoknot geometry | homologous HL_8C3A_058 NA | |
| HL_7QVP_079 | 1/L5/4301:4309 | No text annotation | homologous HL_8C3A_059 NA | |
| HL_7QVP_080 | 1/L5/4321:4326 | GNRA | homologous HL_8C3A_060 NA | |
| HL_7QVP_081 | 1/L5/4352:4362 | No text annotation | geometric HL_4V83_139 NA | |
| HL_7QVP_082 | 1/L5/4417:4425 | No text annotation | homologous HL_8C3A_062 NA | |
| HL_7QVP_083 | 1/L5/4474:4481 | No text annotation | homologous HL_8C3A_063 NA | |
| HL_7QVP_084 | 1/L5/4497:4503 | No text annotation | geometric HL_5TBW_063 NA | |
| HL_7QVP_085 | 1/L5/4540:4545 | GNRA | homologous HL_8C3A_065 NA | |
| HL_7QVP_086 | 1/L5/4603:4608 | GNRA | geometric HL_2OIU_001 HL_34789.2 | |
| HL_7QVP_087 | 1/L5/4645:4652 | No text annotation | geometric HL_3R4F_002 NA | |
| HL_7QVP_088 | 1/L5/4688:4702 | No text annotation | homologous HL_8C3A_068 NA | |
| HL_7QVP_090 | 1/L5/4907:4914 | No text annotation | geometric HL_2Y9H_003 HL_75660.7 | |
| HL_7QVP_091 | 1/L5/4975:4983 | No text annotation | geometric HL_5J7L_201 NA | |
| HL_7QVP_093 | 1/L6/37:44 | No text annotation | homologous HL_8C3A_001 NA | |
| HL_7QVP_094 | 1/L6/68:73 | No text annotation | homologous HL_8C3A_002 NA | |
| HL_7QVP_095 | 1/L6/89:95 | No text annotation | homologous HL_8C3A_003 NA | |
| HL_7QVP_097 | 1/L6/204:211 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_005 NA | |
| HL_7QVP_098 | 1/L6/222:226 | No text annotation | homologous HL_8C3A_006 NA | |
| HL_7QVP_099 | 1/L6/230:238 | T-loop with unstacked turn | homologous HL_8C3A_007 NA | |
| HL_7QVP_100 | 1/L6/289:298 | No text annotation | homologous HL_8C3A_008 NA | |
| HL_7QVP_101 | 1/L6/314:323 | Pseudoknot geometry | homologous HL_8C3A_009 NA | |
| HL_7QVP_102 | 1/L6/368:373 | GNRA | homologous HL_8C3A_010 NA | |
| HL_7QVP_103 | 1/L6/393:398 | GNRA | homologous HL_8C3A_011 NA | |
| HL_7QVP_247 | 1/L6/1170:1191 | No text annotation | ||
| HL_7QVP_107 | 1/L6/1174:1186 | No text annotation | ||
| HL_7QVP_109 | 1/L6/1317:1326 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_014 NA | |
| HL_7QVP_110 | 1/L6/1363:1374 | No text annotation | geometric HL_2ZZM_002 HL_33487.1 | |
| HL_7QVP_111 | 1/L6/1389:1394 | GNRA | homologous HL_8C3A_016 NA | |
| HL_7QVP_114 | 1/L6/1480:1484 | No text annotation | ||
| HL_7QVP_115 | 1/L6/1561:1566 | GNRA | homologous HL_8C3A_019 NA | |
| HL_7QVP_116 | 1/L6/1593:1602 | No text annotation | homologous HL_8C3A_020 NA | |
| HL_7QVP_117 | 1/L6/1627:1635 | No text annotation | homologous HL_8C3A_021 NA | |
| HL_7QVP_118 | 1/L6/1675:1680 | Externally structured | homologous HL_8C3A_022 NA | |
| HL_7QVP_120 | 1/L6/1816:1823 | T-loop related | geometric HL_3R4F_001 HL_63894.2 | |
| HL_7QVP_121 | 1/L6/1864:1870 | GNRA | homologous HL_8C3A_025 NA | |
| HL_7QVP_122 | 1/L6/1886:1893 | No text annotation | homologous HL_8C3A_026 NA | |
| HL_7QVP_124 | 1/L6/2257:2261 | Mini UNCG | geometric HL_4L8H_001 HL_90436.2 | |
| HL_7QVP_125 | 1/L6/2317:2322 | GNRA | homologous HL_8C3A_030 NA | |
| HL_7QVP_126 | 1/L6/2376:2384 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_031 NA | |
| HL_7QVP_127 | 1/L6/2420:2426 | Pseudoknot geometry with 3' bulge | homologous HL_8C3A_032 NA | |
| HL_7QVP_128 | 1/L6/2458:2463 | GNRA variation | homologous HL_8C3A_033 NA | |
| HL_7QVP_130 | 1/L6/2523:2532 | No text annotation | homologous HL_8C3A_035 NA | |
| HL_7QVP_132 | 1/L6/2578:2583 | GNRA | homologous HL_8C3A_036 NA | |
| HL_7QVP_133 | 1/L6/2624:2632 | No text annotation | homologous HL_8C3A_037 NA | |
| HL_7QVP_134 | 1/L6/2664:2670 | No text annotation | homologous HL_8C3A_038 NA | |
| HL_7QVP_136 | 1/L6/2738:2742 | No text annotation | homologous HL_8C3A_040 NA | |
| HL_7QVP_137 | 1/L6/2792:2799 | No text annotation | homologous HL_8C3A_041 NA | |
| HL_7QVP_138 | 1/L6/2810:2816 | GNRA | homologous HL_8C3A_042 NA | |
| HL_7QVP_139 | 1/L6/2872:2877 | UNCG | homologous HL_8C3A_043 NA | |
| HL_7QVP_141 | 1/L6/3614:3618 | No text annotation | homologous HL_8C3A_045 NA | |
| HL_7QVP_142 | 1/L6/3639:3649 | No text annotation | homologous HL_8C3A_046 NA | |
| HL_7QVP_143 | 1/L6/3668:3674 | GNRA | homologous HL_8C3A_047 NA | |
| HL_7QVP_144 | 1/L6/3724:3729 | GNRA | homologous HL_8C3A_048 NA | |
| HL_7QVP_145 | 1/L6/3757:3767 | No text annotation | homologous HL_8C3A_049 NA | |
| HL_7QVP_146 | 1/L6/3796:3804 | No text annotation | homologous HL_8C3A_050 NA | |
| HL_7QVP_147 | 1/L6/3873:3882 | No text annotation | homologous HL_8C3A_051 NA | |
| HL_7QVP_151 | 1/L6/4193:4201 | No text annotation | homologous HL_8C3A_055 NA | |
| HL_7QVP_152 | 1/L6/4210:4222 | No text annotation | homologous HL_8C3A_056 NA | |
| HL_7QVP_153 | 1/L6/4250:4258 | No text annotation | homologous HL_8C3A_057 NA | |
| HL_7QVP_154 | 1/L6/4270:4277 | Pseudoknot geometry | homologous HL_8C3A_058 NA | |
| HL_7QVP_155 | 1/L6/4301:4309 | No text annotation | homologous HL_8C3A_059 NA | |
| HL_7QVP_156 | 1/L6/4321:4326 | GNRA | homologous HL_8C3A_060 NA | |
| HL_7QVP_157 | 1/L6/4352:4362 | No text annotation | geometric HL_3SUX_001 HL_14856.1 | |
| HL_7QVP_158 | 1/L6/4417:4425 | No text annotation | homologous HL_8C3A_062 NA | |
| HL_7QVP_159 | 1/L6/4474:4481 | No text annotation | homologous HL_8C3A_063 NA | |
| HL_7QVP_160 | 1/L6/4497:4503 | No text annotation | homologous HL_8C3A_064 NA | |
| HL_7QVP_161 | 1/L6/4540:4545 | GNRA | homologous HL_8C3A_065 NA | |
| HL_7QVP_162 | 1/L6/4603:4608 | GNRA | homologous HL_8C3A_066 NA | |
| HL_7QVP_163 | 1/L6/4646:4651 | Ribsomal LSU H95 | homologous HL_8C3A_067 NA | |
| HL_7QVP_164 | 1/L6/4688:4702 | No text annotation | homologous HL_8C3A_068 NA | |
| HL_7QVP_166 | 1/L6/4907:4914 | No text annotation | geometric HL_4V9F_003 HL_75660.7 | |
| HL_7QVP_167 | 1/L6/4975:4983 | No text annotation | homologous HL_8C3A_071 NA | |
| HL_7QVP_248 | 1/L7/32:45 | No text annotation | homologous HL_9DFE_067 HL_97756.3 | |
| HL_7QVP_169 | 1/L7/36:41 | No text annotation | homologous HL_5TBW_185 NA | |
| HL_7QVP_170 | 1/L7/86:91 | GNRA | homologous HL_5TBW_186 NA | |
| HL_7QVP_171 | 1/L8/55:62 | No text annotation | geometric HL_1ET4_001 NA | |
| HL_7QVP_172 | 1/L8/68:90 | No text annotation | homologous HL_8C3A_075 NA | |
| HL_7QVP_173 | 1/L8/107:112 | No text annotation | geometric HL_4LFB_004 HL_89167.2 | |
| HL_7QVP_174 | 1/L8/122:128 | No text annotation | geometric HL_1WZ2_007 HL_75660.7 | |
| HL_7QVP_175 | 1/L9/36:41 | No text annotation | geometric HL_5NFV_001 HL_69752.4 | |
| HL_7QVP_176 | 1/L9/86:91 | GNRA | homologous HL_5TBW_186 NA | |
| HL_7QVP_177 | 1/S2/7:17 | No text annotation | geometric HL_4V88_186 NA | |
| HL_7QVP_179 | 1/S2/156:162 | GNRA related | geometric HL_4V88_188 NA | |
| HL_7QVP_181 | 1/S2/288:295 | No text annotation | geometric HL_1WZ2_007 HL_75660.7 | |
| HL_7QVP_183 | 1/S2/377:387 | No text annotation | geometric HL_1KH6_003 HL_33487.1 | |
| HL_7QVP_184 | 1/S2/416:421 | No text annotation | geometric HL_4V88_194 NA | |
| HL_7QVP_185 | 1/S2/441:452 | No text annotation | geometric HL_4V88_195 NA | |
| HL_7QVP_186 | 1/S2/462:467 | UNCG | geometric HL_4V88_196 NA | |
| HL_7QVP_187 | 1/S2/498:504 | No text annotation | geometric HL_5NFV_001 HL_69752.4 | |
| HL_7QVP_189 | 1/S2/569:581 | No text annotation | geometric HL_4V88_199 NA | |
| HL_7QVP_190 | 1/S2/618:623 | GNRA variation | geometric HL_4V88_200 NA | |
| HL_7QVP_191 | 1/S2/820:828 | No text annotation | geometric HL_4V88_203 NA | |
| HL_7QVP_192 | 1/S2/834:841 | No text annotation | ||
| HL_7QVP_194 | 1/S2/957:966 | No text annotation | geometric HL_4V88_206 NA | |
| HL_7QVP_195 | 1/S2/994:999 | GNRA | geometric HL_4V88_207 NA | |
| HL_7QVP_196 | 1/S2/1054:1064 | No text annotation | geometric HL_5J7L_017 NA | |
| HL_7QVP_197 | 1/S2/1112:1121 | No text annotation | ||
| HL_7QVP_198 | 1/S2/1141:1146 | GNRA | geometric HL_6CU1_002 HL_34789.2 | |
| HL_7QVP_199 | 1/S2/1178:1183 | GNRA | geometric HL_6N2V_002 HL_34789.2 | |
| HL_7QVP_200 | 1/S2/1245:1254 | No text annotation | geometric HL_4V88_212 NA | |
| HL_7QVP_201 | 1/S2/1295:1304 | Anticodon loop related | geometric HL_4V88_213 NA | |
| HL_7QVP_202 | 1/S2/1353:1358 | GNRA | geometric HL_4V9F_065 HL_34789.2 | |
| HL_7QVP_203 | 1/S2/1366:1373 | No text annotation | geometric HL_4V88_215 NA | |
| HL_7QVP_205 | 1/S2/1460:1466 | GNRA | geometric HL_4V88_217 NA | |
| HL_7QVP_206 | 1/S2/1565:1570 | GNRA | geometric HL_7RQB_032 NA | |
| HL_7QVP_207 | 1/S2/1614:1625 | No text annotation | geometric HL_4V88_219 NA | |
| HL_7QVP_208 | 1/S2/1658:1666 | No text annotation | geometric HL_4V88_220 NA | |
| HL_7QVP_210 | 1/S2/1847:1852 | GNRA variation | geometric HL_4V88_222 NA | |
| HL_7QVP_211 | 1/S3/7:17 | No text annotation | geometric HL_4V88_186 NA | |
| HL_7QVP_213 | 1/S3/156:162 | No text annotation | geometric HL_4V9F_046 HL_80709.5 | |
| HL_7QVP_215 | 1/S3/288:295 | No text annotation | geometric HL_2Y9H_003 HL_75660.7 | |
| HL_7QVP_217 | 1/S3/377:387 | tRNA D-loop | geometric HL_6UFM_001 HL_04642.3 | |
| HL_7QVP_218 | 1/S3/416:421 | No text annotation | geometric HL_4V88_194 NA | |
| HL_7QVP_219 | 1/S3/441:452 | No text annotation | geometric HL_4V88_195 NA | |
| HL_7QVP_220 | 1/S3/462:467 | UNCG | geometric HL_5Y85_004 HL_61337.2 | |
| HL_7QVP_221 | 1/S3/498:504 | No text annotation | geometric HL_5NFV_001 HL_69752.4 | |
| HL_7QVP_223 | 1/S3/569:581 | No text annotation | geometric HL_4V88_199 NA | |
| HL_7QVP_224 | 1/S3/618:623 | GNRA variation | geometric HL_4V88_200 NA | |
| HL_7QVP_226 | 1/S3/820:828 | No text annotation | geometric HL_4V88_203 NA | |
| HL_7QVP_229 | 1/S3/957:966 | No text annotation | geometric HL_4V88_206 NA | |
| HL_7QVP_230 | 1/S3/994:999 | GNRA | geometric HL_4V88_207 NA | |
| HL_7QVP_231 | 1/S3/1054:1064 | No text annotation | geometric HL_5J7L_017 NA | |
| HL_7QVP_233 | 1/S3/1141:1146 | GNRA | geometric HL_4V88_210 NA | |
| HL_7QVP_234 | 1/S3/1178:1183 | GNRA | geometric HL_6N2V_002 HL_34789.2 | |
| HL_7QVP_235 | 1/S3/1245:1254 | No text annotation | geometric HL_4V88_212 NA | |
| HL_7QVP_236 | 1/S3/1295:1304 | Anticodon loop related | geometric HL_4V88_213 NA | |
| HL_7QVP_237 | 1/S3/1353:1358 | GNRA | geometric HL_2Z75_004 HL_34789.2 | |
| HL_7QVP_238 | 1/S3/1366:1373 | No text annotation | geometric HL_5TBW_024 NA | |
| HL_7QVP_240 | 1/S3/1460:1466 | No text annotation | homologous HL_8C3A_222 NA | |
| HL_7QVP_241 | 1/S3/1565:1570 | No text annotation | geometric HL_4WF9_003 HL_75660.7 | |
| HL_7QVP_242 | 1/S3/1614:1625 | No text annotation | geometric HL_4V88_219 NA | |
| HL_7QVP_243 | 1/S3/1658:1666 | No text annotation | geometric HL_4V88_220 NA | |
| HL_7QVP_245 | 1/S3/1847:1852 | No text annotation | geometric HL_5NFV_001 HL_69752.4 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_7QVP_004 | No text annotation | ||
| HL_7QVP_006 | T-loop with 2 stacked bulged bases | ||
| HL_7QVP_007 | No text annotation | ||
| HL_7QVP_008 | tRNA anticodon loop | ||
| HL_7QVP_009 | T-loop with 2 stacked bulged bases | ||
| HL_7QVP_010 | No text annotation | ||
| HL_7QVP_012 | No text annotation | ||
| HL_7QVP_016 | No text annotation | ||
| HL_7QVP_020 | No text annotation | ||
| HL_7QVP_028 | No text annotation | ||
| HL_7QVP_029 | No text annotation | ||
| HL_7QVP_030 | No text annotation | ||
| HL_7QVP_246 | No text annotation | ||
| HL_7QVP_032 | Mini UNCG | ||
| HL_7QVP_036 | No text annotation | ||
| HL_7QVP_043 | No text annotation | ||
| HL_7QVP_047 | No text annotation | ||
| HL_7QVP_053 | No text annotation | ||
| HL_7QVP_055 | GNRA | ||
| HL_7QVP_064 | No text annotation | ||
| HL_7QVP_072 | No text annotation | ||
| HL_7QVP_073 | No text annotation | ||
| HL_7QVP_074 | No text annotation | ||
| HL_7QVP_089 | No text annotation | ||
| HL_7QVP_092 | No text annotation | ||
| HL_7QVP_096 | No text annotation | ||
| HL_7QVP_104 | No text annotation | ||
| HL_7QVP_105 | No text annotation | ||
| HL_7QVP_106 | No text annotation | ||
| HL_7QVP_108 | Mini UNCG | ||
| HL_7QVP_112 | No text annotation | ||
| HL_7QVP_113 | No text annotation | ||
| HL_7QVP_119 | No text annotation | ||
| HL_7QVP_123 | No text annotation | ||
| HL_7QVP_129 | No text annotation | ||
| HL_7QVP_131 | GNRA | ||
| HL_7QVP_135 | No text annotation | ||
| HL_7QVP_140 | No text annotation | ||
| HL_7QVP_148 | No text annotation | ||
| HL_7QVP_149 | No text annotation | ||
| HL_7QVP_150 | No text annotation | ||
| HL_7QVP_165 | No text annotation | ||
| HL_7QVP_168 | Mini UNCG | ||
| HL_7QVP_178 | No text annotation | ||
| HL_7QVP_180 | No text annotation | ||
| HL_7QVP_182 | No text annotation | ||
| HL_7QVP_188 | No text annotation | ||
| HL_7QVP_193 | No text annotation | ||
| HL_7QVP_204 | No text annotation | ||
| HL_7QVP_209 | No text annotation | ||
| HL_7QVP_212 | No text annotation | ||
| HL_7QVP_214 | Mini UNCG | ||
| HL_7QVP_216 | No text annotation | ||
| HL_7QVP_222 | No text annotation | ||
| HL_7QVP_249 | No text annotation | ||
| HL_7QVP_225 | Externally structured | ||
| HL_7QVP_227 | No text annotation | ||
| HL_7QVP_228 | No text annotation | ||
| HL_7QVP_232 | No text annotation | ||
| HL_7QVP_239 | No text annotation | ||
| HL_7QVP_244 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_7QVP_005 | 1/L1/13:19, 1/L6/415:421 | Triple sheared with non-canonical cWW | geometric IL_5TBW_015 NA | |
| IL_7QVP_006 | 1/L1/25:26, 1/L6/348:350 | Single bulged A | geometric IL_5TBW_013 NA | |
| IL_7QVP_007 | 1/L1/32:33, 1/L6/339:342 | Minor groove platform | geometric IL_7RQB_073 NA | |
| IL_7QVP_008 | 1/L1/64:66, 1/L1/92:95 | Isolated non-canonical cWW pair | geometric IL_5TBW_145 NA | |
| IL_7QVP_009 | 1/L1/139:141, 1/L6/16:18 | Isolated non-canonical cWW pair | geometric IL_1Y27_001 IL_01003.2 | |
| IL_7QVP_010 | 1/L1/143:144, 1/L6/12:14 | Single bulged U | geometric IL_3NDB_005 NA | |
| IL_7QVP_011 | 1/L1/149:151, 1/L6/6:7 | Single bulged C | geometric IL_1DQF_001 NA | |
| IL_7QVP_534 | 1/L5/6:7, 1/L8/149:151 | Single bulged C | homologous IL_8C3A_002 NA | |
| IL_7QVP_535 | 1/L5/12:14, 1/L8/143:144 | Single bulged U | homologous IL_8P9A_232 IL_97561.2 | |
| IL_7QVP_536 | 1/L5/16:18, 1/L8/139:141 | Isolated non-canonical cWW pair | geometric IL_1Z7F_006 IL_01003.2 | |
| IL_7QVP_012 | 1/L5/26:27, 1/L5/55:57 | No text annotation | homologous IL_8C3A_004 NA | |
| IL_7QVP_013 | 1/L5/30:37, 1/L5/44:52 | 9x8 Sarcin-Ricin; G-bulge | geometric IL_4WF9_008 IL_93502.1 | |
| IL_7QVP_014 | 1/L5/81:88, 1/L5/96:102 | No text annotation | homologous IL_8C3A_006 NA | |
| IL_7QVP_015 | 1/L5/118:122, 1/L5/147:153 | No text annotation | ||
| IL_7QVP_016 | 1/L5/125:126, 1/L5/142:144 | Single bulged C | geometric IL_1DQF_001 NA | |
| IL_7QVP_017 | 1/L5/169:173, 1/L5/263:266 | No text annotation | ||
| IL_7QVP_537 | 1/L5/180:189, 1/L5/252:256 | No text annotation | ||
| IL_7QVP_021 | 1/L5/184:189, 1/L5/252:253 | Multiple bulged bases | geometric IL_7Q82_001 NA | |
| IL_7QVP_022 | 1/L5/195:196, 1/L5/244:246 | Single bulged C | geometric IL_1DQF_001 NA | |
| IL_7QVP_023 | 1/L5/199:201, 1/L5/214:215 | Single bulged U | homologous IL_8C3A_013 NA | |
| IL_7QVP_538 | 1/L5/339:342, 1/L8/32:33 | No text annotation | geometric IL_8VTW_072 NA | |
| IL_7QVP_539 | 1/L5/348:350, 1/L8/25:26 | Single bulged A | homologous IL_8C3A_014 NA | |
| IL_7QVP_024 | 1/L5/387:390, 1/L5/401:414 | No text annotation | homologous IL_8C3A_015 NA | |
| IL_7QVP_540 | 1/L5/415:421, 1/L8/13:19 | No text annotation | homologous IL_8P9A_244 IL_22311.1 | |
| IL_7QVP_025 | 1/L5/443:446, 1/L5/1300:1304 | No text annotation | geometric IL_7MLW_007 IL_49140.1 | |
| IL_7QVP_026 | 1/L5/448:450, 1/L5/1297:1298 | Single bulged C | geometric IL_4C7O_003 IL_05642.2 | |
| IL_7QVP_027 | 1/L5/459:460, 1/L5/695:697 | Single bulged C | geometric IL_1S03_006 IL_05642.2 | |
| IL_7QVP_028 | 1/L5/462:464, 1/L5/691:693 | Isolated non-canonical cWW pair | geometric IL_5ED1_002 IL_01003.2 | |
| IL_7QVP_029 | 1/L5/466:472, 1/L5/682:689 | No text annotation | ||
| IL_7QVP_031 | 1/L5/487:489, 1/L5/664:669 | No text annotation | ||
| IL_7QVP_035 | 1/L5/508:510, 1/L5/649:650 | Single bulged A | geometric IL_1U9S_001 IL_14190.2 | |
| IL_7QVP_036 | 1/L5/512:516, 1/L5/645:647 | No text annotation | geometric IL_4M6D_013 IL_53541.1 | |
| IL_7QVP_037 | 1/L5/709:710, 1/L5/1286:1288 | Single bulged G | geometric IL_4LFB_036 IL_28408.2 | |
| IL_7QVP_038 | 1/L5/723:724, 1/L5/942:945 | Multiple bulged bases | geometric IL_7V9E_001 NA | |
| IL_7QVP_039 | 1/L5/727:731, 1/L5/938:939 | No text annotation | ||
| IL_7QVP_040 | 1/L5/732:735, 1/L5/928:937 | No text annotation | ||
| IL_7QVP_041 | 1/L5/737:739, 1/L5/925:926 | No text annotation | ||
| IL_7QVP_043 | 1/L5/745:752, 1/L5/911:919 | No text annotation | geometric IL_5TBW_020 NA | |
| IL_7QVP_044 | 1/L5/1073:1074, 1/L5/1237:1239 | Single bulged A | geometric IL_4R4V_003 IL_14190.2 | |
| IL_7QVP_046 | 1/L5/1082:1084, 1/L5/1213:1217 | No text annotation | geometric IL_3ICQ_003 NA | |
| IL_7QVP_047 | 1/L5/1086:1087, 1/L5/1209:1211 | Single bulged C | geometric IL_3W3S_001 IL_05642.2 | |
| IL_7QVP_050 | 1/L5/1171:1174, 1/L5/1186:1190 | No text annotation | ||
| IL_7QVP_051 | 1/L5/1244:1245, 1/L5/1265:1267 | Single bulged G | geometric IL_4V88_442 NA | |
| IL_7QVP_052 | 1/L5/1357:1360, 1/L5/1379:1382 | No text annotation | ||
| IL_7QVP_544 | 1/L5/1357:1361, 1/L5/1376:1382 | No text annotation | ||
| IL_7QVP_053 | 1/L5/1360:1361, 1/L5/1376:1379 | Major groove intercalation | geometric IL_1U9S_003 IL_71421.2 | |
| IL_7QVP_054 | 1/L5/1425:1429, 1/L5/1455:1460 | Triple sheared related | geometric IL_4V9F_018 IL_67427.1 | |
| IL_7QVP_055 | 1/L5/1431:1434, 1/L5/1450:1453 | Double sheared | geometric IL_4KZD_002 IL_58355.2 | |
| IL_7QVP_056 | 1/L5/1467:1468, 1/L5/1496:1498 | Single bulged A | homologous IL_8C3A_026 NA | |
| IL_7QVP_057 | 1/L5/1474:1476, 1/L5/1489:1490 | Single stack bend | geometric IL_7A0S_005 IL_15011.2 | |
| IL_7QVP_058 | 1/L5/1479:1480, 1/L5/1484:1486 | Single bulged C | geometric IL_5J7L_311 NA | |
| IL_7QVP_059 | 1/L5/1520:1522, 1/L5/1655:1657 | Isolated non-canonical cWW pair | homologous IL_8C3A_029 NA | |
| IL_7QVP_060 | 1/L5/1522:1526, 1/L5/1648:1655 | tHW-tHW cross-strand stack | geometric IL_5TBW_028 NA | |
| IL_7QVP_061 | 1/L5/1545:1546, 1/L5/1612:1614 | Single bulged A | geometric IL_4WF9_022 IL_14190.2 | |
| IL_7QVP_062 | 1/L5/1550:1551, 1/L5/1576:1578 | Single bulged G | geometric IL_4V9F_026 IL_28408.2 | |
| IL_7QVP_063 | 1/L5/1551:1555, 1/L5/1572:1576 | Triple sheared | homologous IL_8C3A_033 NA | |
| IL_7QVP_064 | 1/L5/1586:1589, 1/L5/1605:1607 | Major groove platform with extra cWW | homologous IL_8C3A_034 NA | |
| IL_7QVP_065 | 1/L5/1590:1592, 1/L5/1603:1604 | Single bulged U | homologous IL_8C3A_035 NA | |
| IL_7QVP_066 | 1/L5/1624:1626, 1/L5/1636:1640 | Multiple bulged bases | geometric IL_5TBW_033 NA | |
| IL_7QVP_067 | 1/L5/1671:1673, 1/L5/1682:1684 | Isolated non-canonical cWW pair | homologous IL_8C3A_037 NA | |
| IL_7QVP_068 | 1/L5/1686:1688, 1/L5/1848:1851 | No text annotation | ||
| IL_7QVP_070 | 1/L5/1723:1725, 1/L5/1838:1839 | Single bulged G | homologous IL_8C3A_040 NA | |
| IL_7QVP_071 | 1/L5/1732:1737, 1/L5/1792:1797 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | geometric IL_7A0S_027 NA | |
| IL_7QVP_072 | 1/L5/1737:1738, 1/L5/1790:1792 | Minor groove platform | geometric IL_6DLR_003 IL_34520.2 | |
| IL_7QVP_073 | 1/L5/1739:1744, 1/L5/1786:1789 | C-loop with bulged stacked A's | homologous IL_8C3A_043 NA | |
| IL_7QVP_074 | 1/L5/1746:1749, 1/L5/1781:1784 | Tandem non-canonical cWW pairs | geometric IL_5TBW_041 NA | |
| IL_7QVP_075 | 1/L5/1749:1751, 1/L5/1779:1781 | Isolated non-canonical cWW pair | geometric IL_5TBW_042 NA | |
| IL_7QVP_076 | 1/L5/1753:1756, 1/L5/1775:1777 | No text annotation | geometric IL_4V84_070 NA | |
| IL_7QVP_078 | 1/L5/1814:1816, 1/L5/1823:1824 | Single bulged G | homologous IL_8C3A_048 NA | |
| IL_7QVP_079 | 1/L5/1858:1860, 1/L5/1874:1876 | Isolated non-canonical cWW pair | homologous IL_8C3A_049 NA | |
| IL_7QVP_081 | 1/L5/1905:1909, 1/L5/2067:2071 | UAA/GAN | homologous IL_8C3A_051 NA | |
| IL_7QVP_082 | 1/L5/1911:1918, 1/L5/2064:2065 | SSU/LSU pseudoknot | geometric IL_7RQB_037 NA | |
| IL_7QVP_083 | 1/L5/1918:1920, 1/L5/2063:2064 | No text annotation | ||
| IL_7QVP_084 | 1/L5/1920:1922, 1/L5/2062:2063 | No text annotation | ||
| IL_7QVP_085 | 1/L5/1926:1933, 1/L5/2053:2058 | No text annotation | homologous IL_8C3A_054 NA | |
| IL_7QVP_086 | 1/L5/1933:1944, 1/L5/2038:2053 | No text annotation | geometric IL_5TBW_052 NA | |
| IL_7QVP_087 | 1/L5/1946:1948, 1/L5/2035:2036 | Single bulged U | homologous IL_8C3A_056 NA | |
| IL_7QVP_090 | 1/L5/2083:2085, 1/L5/2272:2273 | Single bulged C | geometric IL_4C7O_003 IL_05642.2 | |
| IL_7QVP_091 | 1/L5/2290:2292, 1/L5/2342:2345 | No text annotation | homologous IL_8C3A_061 NA | |
| IL_7QVP_092 | 1/L5/2299:2301, 1/L5/2334:2335 | Single bulged A | homologous IL_8C3A_062 NA | |
| IL_7QVP_093 | 1/L5/2302:2309, 1/L5/2329:2333 | Kink-turn | homologous IL_8C3A_063 NA | |
| IL_7QVP_094 | 1/L5/2312:2314, 1/L5/2325:2326 | Single bulged A | geometric IL_7RQB_033 NA | |
| IL_7QVP_095 | 1/L5/2358:2364, 1/L5/3858:3863 | No text annotation | homologous IL_8C3A_065 NA | |
| IL_7QVP_096 | 1/L5/2406:2409, 1/L5/2783:2784 | Major groove platform; stack outside cWW | geometric IL_4V9F_050 IL_74641.2 | |
| IL_7QVP_097 | 1/L5/2415:2419, 1/L5/2427:2429 | C-loop | geometric IL_7A0S_047 IL_06671.1 | |
| IL_7QVP_098 | 1/L5/2446:2450, 1/L5/2509:2514 | UAA/GAN | homologous IL_8C3A_067 NA | |
| IL_7QVP_101 | 1/L5/2542:2547, 1/L5/2772:2774 | Isolated non-canonical cWW pair | geometric IL_4WF9_041 IL_76400.1 | |
| IL_7QVP_102 | 1/L5/2549:2550, 1/L5/2768:2770 | Single bulged U | geometric IL_2R8S_004 IL_97561.2 | |
| IL_7QVP_103 | 1/L5/2589:2593, 1/L5/2752:2756 | Triple sheared | geometric IL_7RQB_075 NA | |
| IL_7QVP_104 | 1/L5/2613:2614, 1/L5/2724:2726 | Single bulged C | homologous IL_8C3A_075 NA | |
| IL_7QVP_105 | 1/L5/2614:2615, 1/L5/2722:2724 | Single stack bend | geometric IL_5TBW_070 NA | |
| IL_7QVP_106 | 1/L5/2646:2648, 1/L5/2685:2688 | Isolated tHS basepair with bulges | geometric IL_4V9F_076 IL_87316.1 | |
| IL_7QVP_107 | 1/L5/2651:2653, 1/L5/2681:2682 | Single bulged G | geometric IL_3NDB_004 NA | |
| IL_7QVP_108 | 1/L5/2656:2662, 1/L5/2672:2678 | No text annotation | homologous IL_8C3A_079 NA | |
| IL_7QVP_109 | 1/L5/2832:2838, 1/L5/3850:3853 | No text annotation | homologous IL_8C3A_080 NA | |
| IL_7QVP_110 | 1/L5/2844:2846, 1/L5/3842:3844 | No text annotation | homologous IL_8C3A_081 NA | |
| IL_7QVP_111 | 1/L5/2847:2850, 1/L5/3840:3841 | Major groove platform; stack outside cWW | geometric IL_5TBW_076 NA | |
| IL_7QVP_546 | 1/L5/2847:2855, 1/L5/3837:3841 | No text annotation | homologous IL_8P9A_305 IL_80252.1 | |
| IL_7QVP_112 | 1/L5/2850:2855, 1/L5/3837:3840 | No text annotation | homologous IL_8C3A_083 NA | |
| IL_7QVP_113 | 1/L5/2867:2872, 1/L5/2877:2883 | No text annotation | homologous IL_8C3A_084 NA | |
| IL_7QVP_114 | 1/L5/2889:2891, 1/L5/3610:3612 | Isolated non-canonical cWW pair | homologous IL_8C3A_085 NA | |
| IL_7QVP_115 | 1/L5/2896:2897, 1/L5/3602:3605 | No text annotation | homologous IL_8C3A_086 NA | |
| IL_7QVP_116 | 1/L5/3632:3633, 1/L5/3827:3829 | Single bulged A | homologous IL_8C3A_087 NA | |
| IL_7QVP_117 | 1/L5/3660:3665, 1/L5/3677:3684 | No text annotation | homologous IL_8C3A_088 NA | |
| IL_7QVP_118 | 1/L5/3700:3703, 1/L5/3749:3750 | No text annotation | homologous IL_8C3A_089 NA | |
| IL_7QVP_119 | 1/L5/3704:3705, 1/L5/3745:3748 | Multiple bulged bases | homologous IL_8C3A_090 NA | |
| IL_7QVP_120 | 1/L5/3708:3710, 1/L5/3741:3742 | Single stack bend | homologous IL_8C3A_091 NA | |
| IL_7QVP_547 | 1/L5/3708:3714, 1/L5/3739:3742 | No text annotation | ||
| IL_7QVP_121 | 1/L5/3710:3714, 1/L5/3739:3741 | No text annotation | geometric IL_8C3A_092 NA | |
| IL_7QVP_122 | 1/L5/3715:3721, 1/L5/3732:3738 | No text annotation | homologous IL_8C3A_093 NA | |
| IL_7QVP_123 | 1/L5/3780:3781, 1/L5/3811:3814 | No text annotation | homologous IL_8C3A_094 NA | |
| IL_7QVP_124 | 1/L5/3781:3792, 1/L5/3808:3811 | No text annotation | homologous IL_8C3A_095 NA | |
| IL_7QVP_125 | 1/L5/3895:3898, 1/L5/4563:4565 | No text annotation | homologous IL_8C3A_096 NA | |
| IL_7QVP_126 | 1/L5/3900:3902, 1/L5/4558:4561 | No text annotation | homologous IL_8C3A_097 NA | |
| IL_7QVP_127 | 1/L5/3913:3915, 1/L5/4388:4389 | Single bulged U | homologous IL_8C3A_098 NA | |
| IL_7QVP_128 | 1/L5/3916:3917, 1/L5/4384:4387 | Minor groove platform | homologous IL_8C3A_099 NA | |
| IL_7QVP_129 | 1/L5/3927:3929, 1/L5/4181:4184 | No text annotation | homologous IL_8C3A_100 NA | |
| IL_7QVP_130 | 1/L5/4082:4088, 1/L5/4161:4164 | No text annotation | homologous IL_8C3A_106 NA | |
| IL_7QVP_548 | 1/L5/4091:4129, 1/L5/4155:4158 | No text annotation | ||
| IL_7QVP_131 | 1/L5/4191:4192, 1/L5/4202:4204 | Single bulged A | homologous IL_8C3A_107 NA | |
| IL_7QVP_132 | 1/L5/4243:4245, 1/L5/4263:4267 | No text annotation | homologous IL_8C3A_108 NA | |
| IL_7QVP_133 | 1/L5/4291:4293, 1/L5/4317:4318 | Single bulged A | geometric IL_5WWT_001 IL_14190.2 | |
| IL_7QVP_134 | 1/L5/4295:4298, 1/L5/4312:4315 | Tandem non-canonical cWW pairs | homologous IL_8C3A_109 NA | |
| IL_7QVP_135 | 1/L5/4347:4350, 1/L5/4364:4365 | Single stack bend | geometric IL_5J7L_032 NA | |
| IL_7QVP_136 | 1/L5/4400:4401, 1/L5/4442:4444 | Major groove platform | geometric IL_5TBW_102 NA | |
| IL_7QVP_137 | 1/L5/4401:4403, 1/L5/4440:4442 | Isolated non-canonical cWW pair | geometric IL_5TBW_103 NA | |
| IL_7QVP_138 | 1/L5/4403:4405, 1/L5/4439:4440 | Major groove platform | homologous IL_8C3A_112 NA | |
| IL_7QVP_139 | 1/L5/4405:4407, 1/L5/4435:4439 | Major groove minor groove platform with extra cWW | homologous IL_8C3A_113 NA | |
| IL_7QVP_140 | 1/L5/4412:4416, 1/L5/4426:4430 | No text annotation | homologous IL_8C3A_114 NA | |
| IL_7QVP_141 | 1/L5/4453:4454, 1/L5/4526:4528 | Major groove platform | homologous IL_8C3A_115 NA | |
| IL_7QVP_142 | 1/L5/4456:4458, 1/L5/4520:4524 | No text annotation | homologous IL_8C3A_116 NA | |
| IL_7QVP_143 | 1/L5/4458:4459, 1/L5/4517:4520 | Multiple bulged bases | geometric IL_5TBW_109 NA | |
| IL_7QVP_144 | 1/L5/4466:4468, 1/L5/4489:4491 | Isolated non-canonical cWW pair | homologous IL_8C3A_118 NA | |
| IL_7QVP_549 | 1/L5/4466:4470, 1/L5/4485:4491 | No text annotation | ||
| IL_7QVP_145 | 1/L5/4468:4470, 1/L5/4485:4489 | No text annotation | geometric IL_3DD2_004 IL_09353.1 | |
| IL_7QVP_146 | 1/L5/4495:4497, 1/L5/4503:4505 | Isolated non-canonical cWW pair | homologous IL_8C3A_120 NA | |
| IL_7QVP_147 | 1/L5/4537:4538, 1/L5/4547:4549 | Single bulged A | geometric IL_7RQB_101 NA | |
| IL_7QVP_148 | 1/L5/4580:4582, 1/L5/4721:4723 | No text annotation | geometric IL_3ICQ_003 NA | |
| IL_7QVP_149 | 1/L5/4582:4585, 1/L5/4717:4721 | Other IL | geometric IL_4WF9_054 IL_74317.1 | |
| IL_7QVP_150 | 1/L5/4590:4592, 1/L5/4618:4620 | Isolated non-canonical cWW pair | homologous IL_8C3A_124 NA | |
| IL_7QVP_151 | 1/L5/4596:4603, 1/L5/4608:4614 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_8C3A_125 NA | |
| IL_7QVP_152 | 1/L5/4624:4630, 1/L5/4668:4673 | No text annotation | ||
| IL_7QVP_153 | 1/L5/4632:4637, 1/L5/4662:4666 | UAA/GAN related | homologous IL_8C3A_127 NA | |
| IL_7QVP_154 | 1/L5/4638:4640, 1/L5/4659:4661 | Isolated cWH basepair | geometric IL_3R1C_012 IL_10892.2 | |
| IL_7QVP_155 | 1/L5/4641:4642, 1/L5/4655:4658 | No text annotation | homologous IL_8C3A_128 NA | |
| IL_7QVP_156 | 1/L5/4680:4685, 1/L5/4705:4710 | UAA/GAN with extra cWW | geometric IL_5J7L_350 NA | |
| IL_7QVP_158 | 1/L5/4743:4746, 1/L5/4954:4957 | Tandem non-canonical cWW pairs | geometric IL_4V88_438 NA | |
| IL_7QVP_159 | 1/L5/4749:4751, 1/L5/4948:4951 | No text annotation | ||
| IL_7QVP_160 | 1/L5/4756:4765, 1/L5/4869:4877 | No text annotation | ||
| IL_7QVP_161 | 1/L5/4769:4771, 1/L5/4863:4865 | Isolated non-canonical cWW pair | geometric IL_4V88_424 NA | |
| IL_7QVP_551 | 1/L5/4885:4888, 1/L5/4931:4934 | Tandem non-canonical cWW pairs | geometric IL_4K27_003 IL_71194.2 | |
| IL_7QVP_163 | 1/L5/4891:4896, 1/L5/4924:4928 | No text annotation | ||
| IL_7QVP_165 | 1/L5/4972:4975, 1/L5/4983:4986 | Tandem non-canonical cWW pairs | homologous IL_8C3A_135 NA | |
| IL_7QVP_166 | 1/L5/4992:4994, 1/L5/5057:5059 | Isolated non-canonical cWW pair | geometric IL_3HHN_004 IL_01003.2 | |
| IL_7QVP_167 | 1/L5/4996:4997, 1/L5/5053:5055 | Single bulged C | geometric IL_1KUQ_002 IL_05642.2 | |
| IL_7QVP_168 | 1/L5/5000:5002, 1/L5/5045:5050 | No text annotation | homologous IL_8C3A_138 NA | |
| IL_7QVP_169 | 1/L5/5003:5009, 1/L5/5039:5044 | No text annotation | ||
| IL_7QVP_170 | 1/L5/5012:5014, 1/L5/5035:5036 | Single bulged C | geometric IL_4WF9_035 IL_05642.2 | |
| IL_7QVP_171 | 1/L5/5014:5017, 1/L5/5032:5035 | Double sheared; A in syn | homologous IL_8C3A_141 NA | |
| IL_7QVP_172 | 1/L6/26:27, 1/L6/55:57 | No text annotation | homologous IL_8C3A_004 NA | |
| IL_7QVP_173 | 1/L6/30:37, 1/L6/44:52 | 9x8 Sarcin-Ricin; G-bulge | geometric IL_4WF9_008 IL_93502.1 | |
| IL_7QVP_174 | 1/L6/81:88, 1/L6/96:102 | No text annotation | homologous IL_8C3A_006 NA | |
| IL_7QVP_175 | 1/L6/118:122, 1/L6/147:153 | No text annotation | ||
| IL_7QVP_176 | 1/L6/125:126, 1/L6/142:144 | Single bulged C | geometric IL_1S03_002 IL_05642.2 | |
| IL_7QVP_182 | 1/L6/195:196, 1/L6/244:246 | Single bulged C | geometric IL_1DQF_001 NA | |
| IL_7QVP_183 | 1/L6/199:201, 1/L6/214:215 | Single bulged U | homologous IL_8C3A_013 NA | |
| IL_7QVP_184 | 1/L6/387:390, 1/L6/401:414 | No text annotation | homologous IL_8C3A_015 NA | |
| IL_7QVP_185 | 1/L6/443:446, 1/L6/1300:1304 | No text annotation | ||
| IL_7QVP_186 | 1/L6/448:450, 1/L6/1297:1298 | No text annotation | ||
| IL_7QVP_187 | 1/L6/459:460, 1/L6/695:697 | Single bulged C | geometric IL_3W3S_001 IL_05642.2 | |
| IL_7QVP_190 | 1/L6/482:485, 1/L6/671:672 | Major groove intercalation | geometric IL_1NBS_009 IL_71421.2 | |
| IL_7QVP_195 | 1/L6/508:510, 1/L6/649:650 | Single bulged A | geometric IL_2VPL_002 IL_14190.2 | |
| IL_7QVP_196 | 1/L6/709:710, 1/L6/1286:1288 | Single bulged G | geometric IL_6CZR_148 NA | |
| IL_7QVP_197 | 1/L6/723:724, 1/L6/942:945 | Multiple bulged bases | geometric IL_7V9E_001 NA | |
| IL_7QVP_198 | 1/L6/727:731, 1/L6/938:939 | No text annotation | ||
| IL_7QVP_199 | 1/L6/732:735, 1/L6/928:937 | No text annotation | ||
| IL_7QVP_202 | 1/L6/745:752, 1/L6/911:919 | No text annotation | geometric IL_5TBW_020 NA | |
| IL_7QVP_203 | 1/L6/1073:1074, 1/L6/1237:1239 | Single bulged A | geometric IL_2VPL_002 IL_14190.2 | |
| IL_7QVP_206 | 1/L6/1082:1084, 1/L6/1213:1217 | Isolated near basepair | geometric IL_7A0S_030 IL_42997.5 | |
| IL_7QVP_207 | 1/L6/1086:1087, 1/L6/1209:1211 | Single bulged C | geometric IL_3W3S_001 IL_05642.2 | |
| IL_7QVP_210 | 1/L6/1170:1174, 1/L6/1186:1191 | No text annotation | ||
| IL_7QVP_211 | 1/L6/1244:1245, 1/L6/1265:1267 | Single bulged G | geometric IL_4V88_442 NA | |
| IL_7QVP_212 | 1/L6/1357:1360, 1/L6/1379:1382 | No text annotation | ||
| IL_7QVP_555 | 1/L6/1357:1361, 1/L6/1376:1382 | No text annotation | ||
| IL_7QVP_213 | 1/L6/1360:1361, 1/L6/1376:1379 | Major groove intercalation | geometric IL_1NBS_009 IL_71421.2 | |
| IL_7QVP_214 | 1/L6/1425:1429, 1/L6/1455:1460 | Triple sheared related | geometric IL_4V9F_018 IL_67427.1 | |
| IL_7QVP_215 | 1/L6/1431:1434, 1/L6/1450:1453 | Double sheared | geometric IL_4KZD_002 IL_58355.2 | |
| IL_7QVP_216 | 1/L6/1467:1468, 1/L6/1496:1498 | Single bulged A | homologous IL_8C3A_026 NA | |
| IL_7QVP_217 | 1/L6/1474:1477, 1/L6/1489:1490 | No text annotation | ||
| IL_7QVP_218 | 1/L6/1477:1478, 1/L6/1487:1489 | Single stack bend | geometric IL_4LFB_041 IL_15011.2 | |
| IL_7QVP_219 | 1/L6/1479:1480, 1/L6/1484:1486 | Single bulged C | geometric IL_5J7L_311 NA | |
| IL_7QVP_220 | 1/L6/1520:1522, 1/L6/1655:1657 | Isolated non-canonical cWW pair | geometric IL_5TBW_027 NA | |
| IL_7QVP_221 | 1/L6/1522:1526, 1/L6/1648:1655 | No text annotation | homologous IL_8C3A_030 NA | |
| IL_7QVP_222 | 1/L6/1545:1546, 1/L6/1612:1614 | Single bulged A | geometric IL_4WF9_022 IL_14190.2 | |
| IL_7QVP_223 | 1/L6/1550:1551, 1/L6/1576:1578 | Single bulged G | geometric IL_4V9F_026 IL_28408.2 | |
| IL_7QVP_224 | 1/L6/1551:1555, 1/L6/1572:1576 | Triple sheared | homologous IL_8C3A_033 NA | |
| IL_7QVP_225 | 1/L6/1586:1589, 1/L6/1605:1607 | Major groove platform with extra cWW | homologous IL_8C3A_034 NA | |
| IL_7QVP_226 | 1/L6/1590:1592, 1/L6/1603:1604 | Single bulged U | homologous IL_8C3A_035 NA | |
| IL_7QVP_227 | 1/L6/1624:1626, 1/L6/1636:1640 | Multiple bulged bases | geometric IL_5TBW_033 NA | |
| IL_7QVP_228 | 1/L6/1671:1673, 1/L6/1682:1684 | Isolated non-canonical cWW pair | homologous IL_8C3A_037 NA | |
| IL_7QVP_573 | 1/L6/1686:1688, 1/L6/1848:1851 | No text annotation | ||
| IL_7QVP_231 | 1/L6/1723:1725, 1/L6/1838:1839 | Single bulged G | homologous IL_8C3A_040 NA | |
| IL_7QVP_232 | 1/L6/1732:1737, 1/L6/1792:1797 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | geometric IL_7A0S_027 NA | |
| IL_7QVP_233 | 1/L6/1737:1738, 1/L6/1790:1792 | Minor groove platform | geometric IL_6DLR_003 IL_34520.2 | |
| IL_7QVP_234 | 1/L6/1739:1744, 1/L6/1786:1789 | C-loop with bulged stacked A's | homologous IL_8C3A_043 NA | |
| IL_7QVP_556 | 1/L6/1746:1749, 1/L6/1781:1784 | No text annotation | homologous IL_8C3A_481 NA | |
| IL_7QVP_236 | 1/L6/1749:1751, 1/L6/1779:1781 | Isolated non-canonical cWW pair | homologous IL_8C3A_045 NA | |
| IL_7QVP_238 | 1/L6/1814:1816, 1/L6/1823:1824 | Single bulged G | homologous IL_8C3A_048 NA | |
| IL_7QVP_239 | 1/L6/1858:1860, 1/L6/1874:1876 | Isolated non-canonical cWW pair | homologous IL_8C3A_049 NA | |
| IL_7QVP_241 | 1/L6/1905:1909, 1/L6/2067:2071 | UAA/GAN | homologous IL_8C3A_051 NA | |
| IL_7QVP_242 | 1/L6/1911:1918, 1/L6/2064:2065 | SSU/LSU pseudoknot | geometric IL_7RQB_037 NA | |
| IL_7QVP_243 | 1/L6/1918:1920, 1/L6/2063:2064 | Single bulged G | geometric IL_7D7V_002 IL_28408.2 | |
| IL_7QVP_244 | 1/L6/1920:1922, 1/L6/2062:2063 | No text annotation | ||
| IL_7QVP_245 | 1/L6/1926:1933, 1/L6/2053:2058 | No text annotation | geometric IL_5TBW_051 NA | |
| IL_7QVP_246 | 1/L6/1933:1944, 1/L6/2038:2053 | No text annotation | geometric IL_5TBW_052 NA | |
| IL_7QVP_247 | 1/L6/1946:1948, 1/L6/2035:2036 | Single bulged U | homologous IL_8C3A_056 NA | |
| IL_7QVP_250 | 1/L6/2083:2085, 1/L6/2272:2273 | No text annotation | ||
| IL_7QVP_251 | 1/L6/2290:2292, 1/L6/2342:2345 | No text annotation | homologous IL_8C3A_061 NA | |
| IL_7QVP_252 | 1/L6/2299:2301, 1/L6/2334:2335 | Single bulged A | homologous IL_8C3A_062 NA | |
| IL_7QVP_253 | 1/L6/2302:2309, 1/L6/2329:2333 | Kink-turn | homologous IL_8C3A_063 NA | |
| IL_7QVP_254 | 1/L6/2312:2314, 1/L6/2325:2326 | Single bulged A | geometric IL_7RQB_033 NA | |
| IL_7QVP_255 | 1/L6/2358:2364, 1/L6/3858:3863 | No text annotation | homologous IL_8C3A_065 NA | |
| IL_7QVP_256 | 1/L6/2406:2409, 1/L6/2783:2784 | Major groove platform; stack outside cWW | geometric IL_4V9F_050 IL_74641.2 | |
| IL_7QVP_257 | 1/L6/2415:2419, 1/L6/2427:2429 | C-loop | geometric IL_7A0S_047 IL_06671.1 | |
| IL_7QVP_258 | 1/L6/2446:2450, 1/L6/2509:2514 | UAA/GAN | homologous IL_8C3A_067 NA | |
| IL_7QVP_260 | 1/L6/2542:2547, 1/L6/2772:2774 | Isolated non-canonical cWW pair | geometric IL_7RQB_041 NA | |
| IL_7QVP_261 | 1/L6/2549:2550, 1/L6/2768:2770 | Single bulged U | geometric IL_5TBW_131 NA | |
| IL_7QVP_262 | 1/L6/2589:2593, 1/L6/2752:2756 | Triple sheared | homologous IL_8C3A_073 NA | |
| IL_7QVP_263 | 1/L6/2613:2614, 1/L6/2724:2726 | Single bulged A | geometric IL_3MJA_001 NA | |
| IL_7QVP_264 | 1/L6/2614:2615, 1/L6/2722:2724 | Single stack bend | homologous IL_8C3A_076 NA | |
| IL_7QVP_265 | 1/L6/2646:2648, 1/L6/2685:2688 | Isolated tHS basepair with bulges | geometric IL_4V9F_076 IL_87316.1 | |
| IL_7QVP_574 | 1/L6/2651:2653, 1/L6/2681:2682 | Single bulged G | geometric IL_6TFF_002 IL_28408.2 | |
| IL_7QVP_267 | 1/L6/2656:2662, 1/L6/2672:2678 | No text annotation | homologous IL_8C3A_079 NA | |
| IL_7QVP_268 | 1/L6/2832:2838, 1/L6/3850:3853 | No text annotation | homologous IL_8C3A_080 NA | |
| IL_7QVP_269 | 1/L6/2844:2846, 1/L6/3842:3844 | No text annotation | homologous IL_8C3A_081 NA | |
| IL_7QVP_270 | 1/L6/2847:2850, 1/L6/3840:3841 | Major groove platform; stack outside cWW | homologous IL_8C3A_082 NA | |
| IL_7QVP_557 | 1/L6/2847:2855, 1/L6/3837:3841 | No text annotation | homologous IL_8C3A_484 NA | |
| IL_7QVP_271 | 1/L6/2850:2855, 1/L6/3837:3840 | Intercalated tWH | geometric IL_5TBW_077 NA | |
| IL_7QVP_272 | 1/L6/2867:2872, 1/L6/2877:2883 | tSH-tSH-tHH-tHS | geometric IL_4V9F_063 IL_20700.1 | |
| IL_7QVP_273 | 1/L6/2889:2891, 1/L6/3610:3612 | Isolated non-canonical cWW pair | homologous IL_8C3A_085 NA | |
| IL_7QVP_274 | 1/L6/2896:2897, 1/L6/3602:3605 | No text annotation | homologous IL_8C3A_086 NA | |
| IL_7QVP_276 | 1/L6/3632:3633, 1/L6/3827:3829 | Single bulged A | homologous IL_8C3A_087 NA | |
| IL_7QVP_277 | 1/L6/3660:3665, 1/L6/3677:3684 | No text annotation | homologous IL_8C3A_088 NA | |
| IL_7QVP_278 | 1/L6/3700:3703, 1/L6/3749:3750 | No text annotation | homologous IL_8C3A_089 NA | |
| IL_7QVP_279 | 1/L6/3704:3705, 1/L6/3745:3748 | Multiple bulged bases | homologous IL_8C3A_090 NA | |
| IL_7QVP_280 | 1/L6/3708:3714, 1/L6/3739:3742 | No text annotation | ||
| IL_7QVP_281 | 1/L6/3715:3721, 1/L6/3732:3738 | No text annotation | homologous IL_8C3A_093 NA | |
| IL_7QVP_282 | 1/L6/3780:3781, 1/L6/3811:3814 | Bulged stacked bases | geometric IL_5TBW_089 NA | |
| IL_7QVP_283 | 1/L6/3781:3792, 1/L6/3808:3811 | No text annotation | homologous IL_8C3A_095 NA | |
| IL_7QVP_284 | 1/L6/3895:3898, 1/L6/4563:4565 | No text annotation | homologous IL_8C3A_096 NA | |
| IL_7QVP_285 | 1/L6/3900:3902, 1/L6/4558:4561 | No text annotation | homologous IL_8C3A_097 NA | |
| IL_7QVP_286 | 1/L6/3913:3915, 1/L6/4388:4389 | Single bulged U | homologous IL_8C3A_098 NA | |
| IL_7QVP_287 | 1/L6/3916:3917, 1/L6/4384:4387 | Minor groove platform | homologous IL_8C3A_099 NA | |
| IL_7QVP_288 | 1/L6/3927:3929, 1/L6/4181:4184 | No text annotation | homologous IL_8C3A_100 NA | |
| IL_7QVP_289 | 1/L6/4082:4088, 1/L6/4161:4164 | No text annotation | homologous IL_8C3A_106 NA | |
| IL_7QVP_290 | 1/L6/4191:4192, 1/L6/4202:4204 | Single bulged A | homologous IL_8C3A_107 NA | |
| IL_7QVP_291 | 1/L6/4243:4245, 1/L6/4263:4267 | No text annotation | homologous IL_8C3A_108 NA | |
| IL_7QVP_292 | 1/L6/4291:4293, 1/L6/4317:4318 | Single bulged A | geometric IL_4V88_399 NA | |
| IL_7QVP_293 | 1/L6/4295:4298, 1/L6/4312:4315 | Tandem non-canonical cWW pairs | homologous IL_8C3A_109 NA | |
| IL_7QVP_294 | 1/L6/4347:4350, 1/L6/4364:4365 | Single stack bend | geometric IL_5J7L_032 NA | |
| IL_7QVP_295 | 1/L6/4400:4401, 1/L6/4442:4444 | Major groove platform | geometric IL_5TBW_102 NA | |
| IL_7QVP_296 | 1/L6/4401:4403, 1/L6/4440:4442 | Isolated non-canonical cWW pair | geometric IL_5TBW_103 NA | |
| IL_7QVP_297 | 1/L6/4403:4405, 1/L6/4439:4440 | Major groove platform | geometric IL_5TBW_104 NA | |
| IL_7QVP_298 | 1/L6/4405:4407, 1/L6/4435:4439 | Major groove minor groove platform with extra cWW | geometric IL_4V9F_084 IL_36931.2 | |
| IL_7QVP_299 | 1/L6/4412:4416, 1/L6/4426:4430 | No text annotation | homologous IL_8C3A_114 NA | |
| IL_7QVP_300 | 1/L6/4453:4454, 1/L6/4526:4528 | Major groove platform | homologous IL_8C3A_115 NA | |
| IL_7QVP_301 | 1/L6/4456:4458, 1/L6/4520:4524 | No text annotation | homologous IL_8C3A_116 NA | |
| IL_7QVP_302 | 1/L6/4458:4459, 1/L6/4517:4520 | No text annotation | homologous IL_8C3A_117 NA | |
| IL_7QVP_303 | 1/L6/4466:4468, 1/L6/4489:4491 | Isolated non-canonical cWW pair | homologous IL_8C3A_118 NA | |
| IL_7QVP_558 | 1/L6/4466:4470, 1/L6/4485:4491 | No text annotation | ||
| IL_7QVP_304 | 1/L6/4468:4470, 1/L6/4485:4489 | No text annotation | ||
| IL_7QVP_305 | 1/L6/4495:4497, 1/L6/4503:4505 | Isolated non-canonical cWW pair | geometric IL_5TBW_112 NA | |
| IL_7QVP_306 | 1/L6/4537:4538, 1/L6/4547:4549 | Single bulged A | homologous IL_8C3A_122 NA | |
| IL_7QVP_307 | 1/L6/4580:4582, 1/L6/4721:4723 | Isolated cWH basepair | geometric IL_4E5C_001 IL_10892.2 | |
| IL_7QVP_308 | 1/L6/4582:4585, 1/L6/4717:4721 | Other IL | geometric IL_4WF9_054 IL_74317.1 | |
| IL_7QVP_309 | 1/L6/4590:4592, 1/L6/4618:4620 | Isolated non-canonical cWW pair | homologous IL_8C3A_124 NA | |
| IL_7QVP_310 | 1/L6/4596:4603, 1/L6/4608:4614 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_5TBW_116 NA | |
| IL_7QVP_311 | 1/L6/4624:4629, 1/L6/4669:4673 | No text annotation | ||
| IL_7QVP_312 | 1/L6/4632:4637, 1/L6/4662:4666 | UAA/GAN related | homologous IL_8C3A_127 NA | |
| IL_7QVP_313 | 1/L6/4638:4640, 1/L6/4659:4661 | Isolated cWH basepair | geometric IL_3R1C_018 IL_10892.2 | |
| IL_7QVP_314 | 1/L6/4641:4642, 1/L6/4655:4658 | No text annotation | homologous IL_8C3A_128 NA | |
| IL_7QVP_315 | 1/L6/4681:4685, 1/L6/4705:4709 | UAA/GAN | homologous IL_8C3A_129 NA | |
| IL_7QVP_318 | 1/L6/4749:4751, 1/L6/4948:4951 | No text annotation | ||
| IL_7QVP_319 | 1/L6/4756:4765, 1/L6/4869:4877 | No text annotation | ||
| IL_7QVP_320 | 1/L6/4769:4771, 1/L6/4863:4865 | No text annotation | geometric IL_7RQB_083 NA | |
| IL_7QVP_322 | 1/L6/4885:4889, 1/L6/4930:4934 | Triple non-canonical cWW pairs | geometric IL_8S95_002 IL_71154.2 | |
| IL_7QVP_323 | 1/L6/4891:4896, 1/L6/4924:4928 | No text annotation | ||
| IL_7QVP_325 | 1/L6/4972:4975, 1/L6/4983:4986 | Tandem non-canonical cWW pairs | geometric IL_5TBW_129 NA | |
| IL_7QVP_326 | 1/L6/4992:4994, 1/L6/5057:5059 | Isolated non-canonical cWW pair | geometric IL_3DIL_006 IL_01003.2 | |
| IL_7QVP_327 | 1/L6/4996:4997, 1/L6/5053:5055 | Single bulged C | geometric IL_1KUQ_002 IL_05642.2 | |
| IL_7QVP_328 | 1/L6/5000:5002, 1/L6/5045:5050 | No text annotation | homologous IL_8C3A_138 NA | |
| IL_7QVP_329 | 1/L6/5003:5009, 1/L6/5039:5044 | No text annotation | ||
| IL_7QVP_330 | 1/L6/5012:5014, 1/L6/5035:5036 | Single bulged C | geometric IL_4WF9_035 IL_05642.2 | |
| IL_7QVP_331 | 1/L6/5014:5017, 1/L6/5032:5035 | Double sheared; A in syn | homologous IL_8C3A_141 NA | |
| IL_7QVP_332 | 1/L7/15:16, 1/L7/62:64 | Single bulged A | homologous IL_5TBW_372 NA | |
| IL_7QVP_333 | 1/L7/21:27, 1/L7/52:57 | Minor groove platform related | homologous IL_5TBW_373 NA | |
| IL_7QVP_334 | 1/L7/28:29, 1/L7/48:51 | Major groove minor groove platform; mini C-loop | homologous IL_7RQB_113 NA | |
| IL_7QVP_335 | 1/L7/32:36, 1/L7/41:45 | Symmetric double minor groove platform | geometric IL_7RQB_114 NA | |
| IL_7QVP_336 | 1/L7/71:78, 1/L7/98:104 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5TBW_377 NA | |
| IL_7QVP_337 | 1/L7/79:81, 1/L7/95:97 | Isolated non-canonical cWW pair | geometric IL_5TBW_034 NA | |
| IL_7QVP_338 | 1/L7/82:85, 1/L7/92:94 | Isolated non-canonical cWW pair | homologous IL_5TBW_378 NA | |
| IL_7QVP_560 | 1/L8/44:64, 1/L8/95:99 | No text annotation | homologous IL_8C3A_150 NA | |
| IL_7QVP_339 | 1/L8/64:66, 1/L8/92:95 | Isolated non-canonical cWW pair | geometric IL_5TBW_145 NA | |
| IL_7QVP_340 | 1/L9/15:16, 1/L9/62:64 | Single bulged A | homologous IL_5TBW_372 NA | |
| IL_7QVP_341 | 1/L9/21:27, 1/L9/52:57 | Minor groove platform related | homologous IL_5TBW_373 NA | |
| IL_7QVP_342 | 1/L9/28:29, 1/L9/48:51 | Major groove minor groove platform; mini C-loop | homologous IL_4V9F_103 IL_73108.2 | |
| IL_7QVP_343 | 1/L9/32:36, 1/L9/41:45 | Symmetric double minor groove platform | homologous IL_7RQB_114 NA | |
| IL_7QVP_344 | 1/L9/71:78, 1/L9/98:104 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5TBW_377 NA | |
| IL_7QVP_345 | 1/L9/79:81, 1/L9/95:97 | Isolated non-canonical cWW pair | geometric IL_4V88_470 NA | |
| IL_7QVP_346 | 1/L9/82:85, 1/L9/92:94 | Isolated non-canonical cWW pair | homologous IL_5TBW_378 NA | |
| IL_7QVP_347 | 1/S2/23:25, 1/S2/649:651 | Isolated non-canonical cWW pair | geometric IL_4V88_417 NA | |
| IL_7QVP_348 | 1/S2/26:28, 1/S2/646:648 | No text annotation | geometric IL_4KR9_001 NA | |
| IL_7QVP_349 | 1/S2/34:36, 1/S2/519:521 | Isolated non-canonical cWW pair | geometric IL_6IA2_002 IL_01003.2 | |
| IL_7QVP_350 | 1/S2/37:40, 1/S2/514:518 | Double sheared | geometric IL_4WF9_016 IL_58355.2 | |
| IL_7QVP_351 | 1/S2/41:47, 1/S2/479:481 | No text annotation | geometric IL_4V88_387 NA | |
| IL_7QVP_352 | 1/S2/49:51, 1/S2/476:477 | Minor groove platform | geometric IL_4LFB_004 IL_34520.2 | |
| IL_7QVP_353 | 1/S2/57:62, 1/S2/86:88 | No text annotation | geometric IL_4V88_389 NA | |
| IL_7QVP_354 | 1/S2/63:68, 1/S2/81:85 | No text annotation | homologous IL_8P9A_379 IL_21667.2 | |
| IL_7QVP_355 | 1/S2/108:110, 1/S2/351:353 | Isolated non-canonical cWW pair | geometric IL_1ZX7_004 NA | |
| IL_7QVP_356 | 1/S2/110:112, 1/S2/349:351 | Isolated non-canonical cWW pair | geometric IL_4WF9_042 IL_01003.2 | |
| IL_7QVP_357 | 1/S2/112:115, 1/S2/348:349 | Multiple bulged bases | geometric IL_5WLH_001 IL_71421.2 | |
| IL_7QVP_358 | 1/S2/116:121, 1/S2/343:347 | No text annotation | geometric IL_4V88_393 NA | |
| IL_7QVP_359 | 1/S2/123:124, 1/S2/339:341 | Minor groove platform | geometric IL_4V88_388 NA | |
| IL_7QVP_360 | 1/S2/152:154, 1/S2/164:166 | Isolated cWH basepair | geometric IL_3CZW_002 NA | |
| IL_7QVP_362 | 1/S2/216:220, 1/S2/301:309 | No text annotation | ||
| IL_7QVP_364 | 1/S2/312:314, 1/S2/336:337 | Single bulged A | geometric IL_4V88_399 NA | |
| IL_7QVP_366 | 1/S2/359:364, 1/S2/396:403 | Kink-turn with non-sequential stacking | geometric IL_5J7L_014 NA | |
| IL_7QVP_367 | 1/S2/366:371, 1/S2/393:394 | No text annotation | geometric IL_5Y58_001 IL_37738.1 | |
| IL_7QVP_368 | 1/S2/411:413, 1/S2/424:429 | No text annotation | geometric IL_4V88_404 NA | |
| IL_7QVP_369 | 1/S2/437:439, 1/S2/454:456 | Isolated cWH basepair | geometric IL_4V88_405 NA | |
| IL_7QVP_370 | 1/S2/459:461, 1/S2/468:470 | Isolated near basepair | geometric IL_3NJ7_004 IL_42997.5 | |
| IL_7QVP_371 | 1/S2/487:489, 1/S2/511:512 | Single bulged U | geometric IL_4LFB_014 IL_97561.2 | |
| IL_7QVP_372 | 1/S2/491:495, 1/S2/508:509 | C-loop | geometric IL_5J7L_018 NA | |
| IL_7QVP_373 | 1/S2/495:496, 1/S2/506:508 | Single bulged G | geometric IL_5J7L_019 NA | |
| IL_7QVP_376 | 1/S2/566:569, 1/S2/581:584 | Tandem non-canonical cWW pairs | geometric IL_6JDV_001 IL_71194.2 | |
| IL_7QVP_377 | 1/S2/599:608, 1/S2/635:637 | No text annotation | ||
| IL_7QVP_378 | 1/S2/611:617, 1/S2/624:632 | Kink-turn related | geometric IL_4V88_415 NA | |
| IL_7QVP_379 | 1/S2/663:665, 1/S2/1162:1164 | Isolated non-canonical cWW pair | geometric IL_1Y27_001 IL_01003.2 | |
| IL_7QVP_380 | 1/S2/665:671, 1/S2/1161:1162 | No text annotation | geometric IL_4V88_416 NA | |
| IL_7QVP_381 | 1/S2/673:675, 1/S2/1030:1032 | Isolated non-canonical cWW pair | geometric IL_1Z7F_002 NA | |
| IL_7QVP_382 | 1/S2/676:680, 1/S2/1025:1029 | tSH-tHW-tHS | geometric IL_4V88_418 NA | |
| IL_7QVP_383 | 1/S2/802:805, 1/S2/858:863 | No text annotation | ||
| IL_7QVP_384 | 1/S2/805:807, 1/S2/856:858 | Isolated non-canonical cWW pair | geometric IL_5TBW_115 NA | |
| IL_7QVP_385 | 1/S2/807:815, 1/S2/849:856 | No text annotation | geometric IL_4V88_425 NA | |
| IL_7QVP_386 | 1/S2/832:834, 1/S2/841:842 | Single stack bend | geometric IL_7A0S_054 IL_15011.2 | |
| IL_7QVP_387 | 1/S2/874:876, 1/S2/910:912 | Isolated non-canonical cWW pair | geometric IL_6IA2_005 IL_01003.2 | |
| IL_7QVP_388 | 1/S2/877:879, 1/S2/907:909 | Isolated non-canonical cWW pair | geometric IL_5TBW_042 NA | |
| IL_7QVP_389 | 1/S2/922:924, 1/S2/1018:1022 | No text annotation | ||
| IL_7QVP_390 | 1/S2/925:926, 1/S2/1015:1017 | Single bulged U | geometric IL_7KVT_002 IL_97561.2 | |
| IL_7QVP_391 | 1/S2/928:931, 1/S2/1010:1013 | Tandem non-canonical cWW pairs | geometric IL_4V88_430 NA | |
| IL_7QVP_392 | 1/S2/931:935, 1/S2/1007:1010 | Tandem non-canonical cWW pairs | geometric IL_4V88_431 NA | |
| IL_7QVP_393 | 1/S2/942:945, 1/S2/981:984 | Tandem non-canonical cWW pairs | geometric IL_4V88_432 NA | |
| IL_7QVP_394 | 1/S2/952:956, 1/S2/967:974 | Kink-turn | geometric IL_4V88_434 NA | |
| IL_7QVP_395 | 1/S2/1042:1047, 1/S2/1071:1073 | Other IL | geometric IL_4V88_435 NA | |
| IL_7QVP_396 | 1/S2/1047:1051, 1/S2/1067:1071 | tSH-tHW-tHS | geometric IL_5J7L_037 NA | |
| IL_7QVP_397 | 1/S2/1091:1093, 1/S2/1152:1158 | No text annotation | geometric IL_4V88_437 NA | |
| IL_7QVP_398 | 1/S2/1097:1101, 1/S2/1131:1135 | No text annotation | geometric IL_5TBW_121 NA | |
| IL_7QVP_399 | 1/S2/1101:1103, 1/S2/1129:1131 | Isolated non-canonical cWW pair | geometric IL_1MFQ_003 IL_01003.2 | |
| IL_7QVP_400 | 1/S2/1108:1110, 1/S2/1123:1124 | Minor groove platform | geometric IL_4V88_388 NA | |
| IL_7QVP_401 | 1/S2/1168:1175, 1/S2/1186:1191 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | geometric IL_4V88_440 NA | |
| IL_7QVP_402 | 1/S2/1203:1205, 1/S2/1693:1696 | Isolated non-canonical cWW with bulges | geometric IL_4V9F_097 IL_68118.2 | |
| IL_7QVP_403 | 1/S2/1206:1208, 1/S2/1691:1692 | Single bulged G | geometric IL_6CZR_148 NA | |
| IL_7QVP_404 | 1/S2/1214:1217, 1/S2/1681:1685 | C-loop | geometric IL_1KOG_007 IL_63596.12 | |
| IL_7QVP_405 | 1/S2/1230:1232, 1/S2/1526:1528 | Isolated non-canonical cWW pair | geometric IL_4V88_444 NA | |
| IL_7QVP_406 | 1/S2/1235:1236, 1/S2/1521:1523 | Minor groove platform | geometric IL_4V88_445 NA | |
| IL_7QVP_407 | 1/S2/1270:1272, 1/S2/1510:1512 | Isolated non-canonical cWW pair | geometric IL_5MWI_005 NA | |
| IL_7QVP_408 | 1/S2/1281:1287, 1/S2/1314:1316 | No text annotation | ||
| IL_7QVP_561 | 1/S2/1282:1290, 1/S2/1309:1315 | No text annotation | ||
| IL_7QVP_409 | 1/S2/1287:1290, 1/S2/1309:1314 | No text annotation | ||
| IL_7QVP_411 | 1/S2/1325:1327, 1/S2/1502:1503 | Single bulged U | geometric IL_3MEI_001 IL_97561.2 | |
| IL_7QVP_412 | 1/S2/1329:1333, 1/S2/1498:1500 | Isolated cWS basepair | geometric IL_4LFB_044 IL_82453.1 | |
| IL_7QVP_562 | 1/S2/1329:1335, 1/S2/1492:1500 | No text annotation | homologous IL_8P9A_439 IL_99893.1 | |
| IL_7QVP_413 | 1/S2/1333:1335, 1/S2/1492:1498 | Minor groove platform with extra cWW | geometric IL_4V88_451 NA | |
| IL_7QVP_414 | 1/S2/1337:1338, 1/S2/1488:1490 | Single bulged A | geometric IL_4V88_452 NA | |
| IL_7QVP_415 | 1/S2/1347:1349, 1/S2/1380:1382 | Isolated non-canonical cWW pair | geometric IL_5TBW_042 NA | |
| IL_7QVP_416 | 1/S2/1363:1365, 1/S2/1374:1375 | Minor groove platform | geometric IL_4V88_454 NA | |
| IL_7QVP_417 | 1/S2/1395:1399, 1/S2/1447:1450 | Tandem non-canonical cWW pairs | geometric IL_3WBM_003 IL_15225.2 | |
| IL_7QVP_418 | 1/S2/1402:1405, 1/S2/1441:1444 | Minor groove platform | geometric IL_4V88_456 NA | |
| IL_7QVP_420 | 1/S2/1412:1413, 1/S2/1427:1429 | Single bulged G | geometric IL_5J7L_019 NA | |
| IL_7QVP_421 | 1/S2/1537:1539, 1/S2/1594:1596 | Isolated non-canonical cWW pair | geometric IL_4P3T_001 NA | |
| IL_7QVP_563 | 1/S2/1541:1550, 1/S2/1582:1592 | No text annotation | ||
| IL_7QVP_422 | 1/S2/1550:1558, 1/S2/1577:1582 | 180 degree turn | geometric IL_5J7L_055 NA | |
| IL_7QVP_423 | 1/S2/1560:1562, 1/S2/1573:1575 | Isolated non-canonical cWW pair | geometric IL_1YZ9_001 NA | |
| IL_7QVP_424 | 1/S2/1604:1610, 1/S2/1629:1635 | No text annotation | homologous IL_8C3A_469 NA | |
| IL_7QVP_425 | 1/S2/1700:1702, 1/S2/1833:1836 | No text annotation | geometric IL_4V88_463 NA | |
| IL_7QVP_426 | 1/S2/1702:1705, 1/S2/1829:1833 | No text annotation | geometric IL_4V88_464 NA | |
| IL_7QVP_427 | 1/S2/1706:1708, 1/S2/1826:1828 | Isolated non-canonical cWW pair | geometric IL_4V88_465 NA | |
| IL_7QVP_428 | 1/S2/1708:1711, 1/S2/1822:1826 | No text annotation | geometric IL_8CRE_401 IL_65740.1 | |
| IL_7QVP_429 | 1/S2/1714:1716, 1/S2/1817:1819 | Isolated non-canonical cWW pair | geometric IL_5ED1_002 IL_01003.2 | |
| IL_7QVP_430 | 1/S2/1717:1720, 1/S2/1813:1816 | Double sheared | geometric IL_4V88_468 NA | |
| IL_7QVP_431 | 1/S2/1720:1722, 1/S2/1812:1813 | Single bulged U | geometric IL_4V88_469 NA | |
| IL_7QVP_432 | 1/S2/1729:1731, 1/S2/1803:1805 | Isolated non-canonical cWW pair | geometric IL_5TBW_016 NA | |
| IL_7QVP_433 | 1/S2/1733:1736, 1/S2/1798:1801 | Double sheared | geometric IL_4V88_471 NA | |
| IL_7QVP_434 | 1/S2/1739:1741, 1/S2/1793:1795 | Isolated non-canonical cWW pair | geometric IL_4E48_001 IL_01003.2 | |
| IL_7QVP_435 | 1/S2/1742:1746, 1/S2/1788:1792 | Triple sheared | geometric IL_4V88_474 NA | |
| IL_7QVP_437 | 1/S3/23:25, 1/S3/649:651 | Isolated non-canonical cWW pair | geometric IL_4M4O_001 IL_01003.2 | |
| IL_7QVP_439 | 1/S3/34:36, 1/S3/519:521 | Isolated non-canonical cWW pair | geometric IL_6IA2_002 IL_01003.2 | |
| IL_7QVP_440 | 1/S3/37:40, 1/S3/514:518 | Double sheared | geometric IL_4WF9_016 IL_58355.2 | |
| IL_7QVP_441 | 1/S3/41:47, 1/S3/479:481 | No text annotation | geometric IL_4V88_387 NA | |
| IL_7QVP_442 | 1/S3/49:51, 1/S3/476:477 | Minor groove platform | geometric IL_4V88_388 NA | |
| IL_7QVP_443 | 1/S3/57:62, 1/S3/86:88 | No text annotation | geometric IL_4V88_389 NA | |
| IL_7QVP_444 | 1/S3/63:68, 1/S3/81:85 | No text annotation | geometric IL_4V88_390 NA | |
| IL_7QVP_445 | 1/S3/108:110, 1/S3/351:353 | Isolated non-canonical cWW pair | geometric IL_1ZX7_004 NA | |
| IL_7QVP_446 | 1/S3/110:112, 1/S3/349:351 | Isolated non-canonical cWW pair | geometric IL_4WF9_042 IL_01003.2 | |
| IL_7QVP_564 | 1/S3/110:115, 1/S3/348:351 | No text annotation | ||
| IL_7QVP_447 | 1/S3/112:115, 1/S3/348:349 | Multiple bulged bases | geometric IL_5WLH_001 IL_71421.2 | |
| IL_7QVP_448 | 1/S3/116:121, 1/S3/343:347 | No text annotation | geometric IL_4V88_393 NA | |
| IL_7QVP_450 | 1/S3/145:151, 1/S3/167:174 | tWH-tWH-tHW-tHW | geometric IL_4V88_394 NA | |
| IL_7QVP_454 | 1/S3/312:314, 1/S3/336:337 | Single bulged A | geometric IL_4V88_399 NA | |
| IL_7QVP_456 | 1/S3/359:364, 1/S3/396:403 | Kink-turn with non-sequential stacking | geometric IL_5J7L_014 NA | |
| IL_7QVP_457 | 1/S3/366:371, 1/S3/393:394 | No text annotation | geometric IL_5Y58_001 IL_37738.1 | |
| IL_7QVP_458 | 1/S3/411:413, 1/S3/424:429 | No text annotation | geometric IL_4V88_404 NA | |
| IL_7QVP_459 | 1/S3/437:439, 1/S3/454:456 | Isolated cWH basepair | geometric IL_4V88_405 NA | |
| IL_7QVP_460 | 1/S3/459:461, 1/S3/468:470 | Isolated near basepair | geometric IL_3NJ7_004 IL_42997.5 | |
| IL_7QVP_461 | 1/S3/487:489, 1/S3/511:512 | Single bulged U | geometric IL_4LFB_014 IL_97561.2 | |
| IL_7QVP_462 | 1/S3/491:495, 1/S3/508:509 | C-loop | geometric IL_5J7L_018 NA | |
| IL_7QVP_463 | 1/S3/495:496, 1/S3/506:508 | Single bulged G | geometric IL_5J7L_019 NA | |
| IL_7QVP_467 | 1/S3/565:569, 1/S3/581:585 | No text annotation | geometric IL_4V88_422 NA | |
| IL_7QVP_468 | 1/S3/599:608, 1/S3/635:637 | Isolated cWH basepair | geometric IL_8AF0_002 IL_10892.2 | |
| IL_7QVP_469 | 1/S3/611:617, 1/S3/624:632 | Kink-turn related | geometric IL_4V88_415 NA | |
| IL_7QVP_470 | 1/S3/663:665, 1/S3/1162:1164 | Isolated non-canonical cWW pair | geometric IL_1Y27_001 IL_01003.2 | |
| IL_7QVP_471 | 1/S3/665:671, 1/S3/1161:1162 | No text annotation | geometric IL_4V88_416 NA | |
| IL_7QVP_472 | 1/S3/673:675, 1/S3/1030:1032 | Isolated non-canonical cWW pair | geometric IL_4E59_001 IL_01003.2 | |
| IL_7QVP_473 | 1/S3/676:680, 1/S3/1025:1029 | tSH-tHW-tHS | geometric IL_4V88_418 NA | |
| IL_7QVP_476 | 1/S3/802:803, 1/S3/860:863 | Major groove minor groove platform; mini C-loop | geometric IL_4V88_423 NA | |
| IL_7QVP_477 | 1/S3/805:807, 1/S3/856:858 | Isolated non-canonical cWW pair | geometric IL_7A0S_078 IL_71625.2 | |
| IL_7QVP_478 | 1/S3/807:815, 1/S3/849:856 | No text annotation | geometric IL_4V88_425 NA | |
| IL_7QVP_479 | 1/S3/832:834, 1/S3/841:842 | Single stack bend | geometric IL_7A0S_054 IL_15011.2 | |
| IL_7QVP_480 | 1/S3/874:876, 1/S3/910:912 | Isolated non-canonical cWW pair | geometric IL_4E48_003 IL_01003.2 | |
| IL_7QVP_482 | 1/S3/922:923, 1/S3/1019:1022 | Major groove platform; stack outside cWW | geometric IL_4V88_428 NA | |
| IL_7QVP_483 | 1/S3/925:926, 1/S3/1015:1017 | Single bulged U | geometric IL_6UFH_004 IL_97561.2 | |
| IL_7QVP_484 | 1/S3/928:931, 1/S3/1010:1013 | Tandem non-canonical cWW pairs | geometric IL_4V88_430 NA | |
| IL_7QVP_485 | 1/S3/931:935, 1/S3/1007:1010 | Tandem non-canonical cWW pairs | geometric IL_4V88_431 NA | |
| IL_7QVP_486 | 1/S3/942:945, 1/S3/981:984 | Tandem non-canonical cWW pairs | geometric IL_4V88_432 NA | |
| IL_7QVP_487 | 1/S3/952:956, 1/S3/967:974 | Kink-turn | geometric IL_4V88_434 NA | |
| IL_7QVP_488 | 1/S3/1042:1047, 1/S3/1071:1073 | Other IL | geometric IL_4V88_435 NA | |
| IL_7QVP_489 | 1/S3/1047:1051, 1/S3/1067:1071 | tSH-tHW-tHS | geometric IL_4V88_436 NA | |
| IL_7QVP_490 | 1/S3/1091:1093, 1/S3/1152:1158 | No text annotation | geometric IL_4V88_437 NA | |
| IL_7QVP_491 | 1/S3/1098:1101, 1/S3/1131:1134 | Tandem non-canonical cWW pairs | geometric IL_4V88_438 NA | |
| IL_7QVP_492 | 1/S3/1101:1103, 1/S3/1129:1131 | Isolated non-canonical cWW contact | geometric IL_5UNE_001 IL_87720.1 | |
| IL_7QVP_493 | 1/S3/1108:1110, 1/S3/1123:1124 | No text annotation | ||
| IL_7QVP_494 | 1/S3/1168:1175, 1/S3/1186:1191 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | geometric IL_4V88_440 NA | |
| IL_7QVP_495 | 1/S3/1203:1205, 1/S3/1693:1696 | Isolated non-canonical cWW with bulges | geometric IL_4V9F_097 IL_68118.2 | |
| IL_7QVP_496 | 1/S3/1206:1208, 1/S3/1691:1692 | Single bulged G | geometric IL_4LFB_036 IL_28408.2 | |
| IL_7QVP_497 | 1/S3/1214:1217, 1/S3/1681:1685 | C-loop | geometric IL_1KOG_007 IL_63596.12 | |
| IL_7QVP_498 | 1/S3/1230:1232, 1/S3/1526:1528 | Isolated non-canonical cWW pair | geometric IL_4V88_444 NA | |
| IL_7QVP_499 | 1/S3/1235:1236, 1/S3/1521:1523 | Minor groove platform | geometric IL_4V88_445 NA | |
| IL_7QVP_500 | 1/S3/1270:1272, 1/S3/1510:1512 | Isolated non-canonical cWW pair | geometric IL_6IA2_002 IL_01003.2 | |
| IL_7QVP_504 | 1/S3/1325:1327, 1/S3/1502:1503 | Single bulged U | geometric IL_3MEI_001 IL_97561.2 | |
| IL_7QVP_505 | 1/S3/1329:1333, 1/S3/1498:1500 | Isolated cWS basepair | geometric IL_4LFB_044 IL_82453.1 | |
| IL_7QVP_567 | 1/S3/1329:1335, 1/S3/1492:1500 | No text annotation | homologous IL_8P9A_439 IL_99893.1 | |
| IL_7QVP_506 | 1/S3/1333:1335, 1/S3/1492:1498 | Minor groove platform with extra cWW | geometric IL_4V88_451 NA | |
| IL_7QVP_507 | 1/S3/1337:1338, 1/S3/1488:1490 | Single bulged A | geometric IL_4V88_452 NA | |
| IL_7QVP_508 | 1/S3/1340:1342, 1/S3/1483:1486 | No text annotation | ||
| IL_7QVP_509 | 1/S3/1347:1349, 1/S3/1380:1382 | Isolated non-canonical cWW pair | geometric IL_5TBW_042 NA | |
| IL_7QVP_510 | 1/S3/1363:1365, 1/S3/1374:1375 | Minor groove platform | geometric IL_4V88_454 NA | |
| IL_7QVP_511 | 1/S3/1395:1399, 1/S3/1447:1450 | No text annotation | ||
| IL_7QVP_512 | 1/S3/1402:1405, 1/S3/1441:1444 | Minor groove platform | geometric IL_4V88_456 NA | |
| IL_7QVP_514 | 1/S3/1412:1413, 1/S3/1427:1429 | Single bulged G | geometric IL_5J7L_019 NA | |
| IL_7QVP_515 | 1/S3/1537:1539, 1/S3/1594:1596 | Isolated non-canonical cWW pair | geometric IL_4P3T_001 NA | |
| IL_7QVP_568 | 1/S3/1541:1550, 1/S3/1582:1592 | No text annotation | ||
| IL_7QVP_516 | 1/S3/1550:1558, 1/S3/1577:1582 | 180 degree turn | geometric IL_5J7L_055 NA | |
| IL_7QVP_517 | 1/S3/1560:1562, 1/S3/1573:1575 | Isolated non-canonical cWW pair | geometric IL_5AOX_001 IL_01003.2 | |
| IL_7QVP_518 | 1/S3/1604:1610, 1/S3/1629:1635 | No text annotation | homologous IL_8C3A_469 NA | |
| IL_7QVP_519 | 1/S3/1700:1702, 1/S3/1833:1836 | No text annotation | geometric IL_4V88_463 NA | |
| IL_7QVP_520 | 1/S3/1702:1705, 1/S3/1829:1833 | No text annotation | geometric IL_4V88_464 NA | |
| IL_7QVP_521 | 1/S3/1706:1708, 1/S3/1826:1828 | Isolated non-canonical cWW pair | geometric IL_4V88_465 NA | |
| IL_7QVP_522 | 1/S3/1708:1711, 1/S3/1822:1826 | No text annotation | homologous IL_8CRE_469 IL_73099.1 | |
| IL_7QVP_523 | 1/S3/1714:1716, 1/S3/1817:1819 | Isolated non-canonical cWW pair | geometric IL_4V88_467 NA | |
| IL_7QVP_524 | 1/S3/1717:1720, 1/S3/1813:1816 | Double sheared | geometric IL_4V88_468 NA | |
| IL_7QVP_525 | 1/S3/1720:1722, 1/S3/1812:1813 | Single bulged U | geometric IL_4V88_469 NA | |
| IL_7QVP_527 | 1/S3/1733:1736, 1/S3/1798:1801 | Double sheared | geometric IL_4V88_471 NA | |
| IL_7QVP_528 | 1/S3/1739:1741, 1/S3/1793:1795 | Isolated non-canonical cWW pair | geometric IL_3BNN_005 IL_71625.2 | |
| IL_7QVP_529 | 1/S3/1742:1746, 1/S3/1788:1792 | Triple sheared | geometric IL_4V88_474 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_7QVP_532 | Isolated non-canonical cWW pair | ||
| IL_7QVP_001 | Isolated non-canonical cWW pair | ||
| IL_7QVP_002 | Single stack bend | ||
| IL_7QVP_003 | No text annotation | ||
| IL_7QVP_533 | No text annotation | ||
| IL_7QVP_004 | Single stack bend | ||
| IL_7QVP_018 | Single stack bend | ||
| IL_7QVP_019 | No text annotation | ||
| IL_7QVP_020 | Tandem non-canonical cWW pairs | ||
| IL_7QVP_030 | No text annotation | ||
| IL_7QVP_032 | No text annotation | ||
| IL_7QVP_541 | No text annotation | ||
| IL_7QVP_569 | No text annotation | ||
| IL_7QVP_542 | No text annotation | ||
| IL_7QVP_033 | No text annotation | ||
| IL_7QVP_570 | No text annotation | ||
| IL_7QVP_034 | No text annotation | ||
| IL_7QVP_042 | No text annotation | ||
| IL_7QVP_045 | No text annotation | ||
| IL_7QVP_048 | No text annotation | ||
| IL_7QVP_543 | Tandem non-canonical cWW pairs | ||
| IL_7QVP_049 | Isolated non-canonical cWW contact | ||
| IL_7QVP_069 | No text annotation | ||
| IL_7QVP_077 | Isolated non-canonical cWW pair | ||
| IL_7QVP_080 | No text annotation | ||
| IL_7QVP_088 | No text annotation | ||
| IL_7QVP_545 | No text annotation | ||
| IL_7QVP_089 | No text annotation | ||
| IL_7QVP_099 | Minor groove platform | ||
| IL_7QVP_100 | No text annotation | ||
| IL_7QVP_157 | Isolated non-canonical cWW pair | ||
| IL_7QVP_550 | No text annotation | ||
| IL_7QVP_162 | Triple non-canonical cWW pairs | ||
| IL_7QVP_164 | Single bulged C | ||
| IL_7QVP_177 | No text annotation | ||
| IL_7QVP_178 | Single stack bend | ||
| IL_7QVP_179 | No text annotation | ||
| IL_7QVP_180 | Tandem non-canonical cWW pairs | ||
| IL_7QVP_552 | No text annotation | ||
| IL_7QVP_181 | Multiple bulged bases | ||
| IL_7QVP_188 | Isolated non-canonical cWW pair | ||
| IL_7QVP_189 | No text annotation | ||
| IL_7QVP_571 | No text annotation | ||
| IL_7QVP_191 | No text annotation | ||
| IL_7QVP_553 | Tandem non-canonical cWW pairs | ||
| IL_7QVP_192 | No text annotation | ||
| IL_7QVP_554 | Isolated non-canonical cWW pair | ||
| IL_7QVP_193 | No text annotation | ||
| IL_7QVP_194 | No text annotation | ||
| IL_7QVP_572 | Multiple bulged bases | ||
| IL_7QVP_200 | No text annotation | ||
| IL_7QVP_201 | No text annotation | ||
| IL_7QVP_204 | No text annotation | ||
| IL_7QVP_205 | Single stack bend | ||
| IL_7QVP_208 | No text annotation | ||
| IL_7QVP_209 | Isolated non-canonical cWW contact | ||
| IL_7QVP_229 | No text annotation | ||
| IL_7QVP_230 | No text annotation | ||
| IL_7QVP_235 | No text annotation | ||
| IL_7QVP_237 | No text annotation | ||
| IL_7QVP_240 | No text annotation | ||
| IL_7QVP_248 | No text annotation | ||
| IL_7QVP_249 | No text annotation | ||
| IL_7QVP_259 | Minor groove platform | ||
| IL_7QVP_266 | Isolated non-canonical cWW pair | ||
| IL_7QVP_275 | No text annotation | ||
| IL_7QVP_559 | No text annotation | ||
| IL_7QVP_316 | Isolated non-canonical cWW pair | ||
| IL_7QVP_317 | Tandem non-canonical cWW pairs | ||
| IL_7QVP_321 | Single stack bend | ||
| IL_7QVP_324 | Single bulged C | ||
| IL_7QVP_361 | No text annotation | ||
| IL_7QVP_363 | No text annotation | ||
| IL_7QVP_365 | No text annotation | ||
| IL_7QVP_374 | Isolated non-canonical cWW contact | ||
| IL_7QVP_375 | No text annotation | ||
| IL_7QVP_575 | Single stack bend | ||
| IL_7QVP_410 | No text annotation | ||
| IL_7QVP_419 | Multiple bulged bases | ||
| IL_7QVP_436 | Multiple bulged bases | ||
| IL_7QVP_438 | Isolated non-canonical cWW pair | ||
| IL_7QVP_449 | No text annotation | ||
| IL_7QVP_451 | Isolated cWH basepair | ||
| IL_7QVP_452 | Double sheared with non-canonical cWW | ||
| IL_7QVP_453 | No text annotation | ||
| IL_7QVP_455 | No text annotation | ||
| IL_7QVP_464 | Single stack bend | ||
| IL_7QVP_465 | No text annotation | ||
| IL_7QVP_466 | No text annotation | ||
| IL_7QVP_576 | Single stack bend | ||
| IL_7QVP_565 | No text annotation | ||
| IL_7QVP_474 | Isolated non-canonical cWW pair | ||
| IL_7QVP_475 | No text annotation | ||
| IL_7QVP_481 | Isolated non-canonical cWW pair | ||
| IL_7QVP_501 | No text annotation | ||
| IL_7QVP_566 | No text annotation | ||
| IL_7QVP_502 | No text annotation | ||
| IL_7QVP_503 | No text annotation | ||
| IL_7QVP_513 | No text annotation | ||
| IL_7QVP_526 | Isolated non-canonical cWW pair | ||
| IL_7QVP_530 | Multiple bulged bases | ||
| IL_7QVP_531 | Major groove platform |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_7QVP_001 | 1/L1/19:20, 1/L6/380:387, 1/L6/414:415 | No text annotation | geometric J3_5J7L_036 NA | |
| J3_7QVP_060 | 1/L1/19:20, 1/L6/380:390, 1/L6/401:415 | No text annotation | geometric J3_5TBW_062 NA | |
| J3_7QVP_061 | 1/L1/21:24, 1/L6/351:367, 1/L6/374:379 | No text annotation | geometric J3_5TBW_061 NA | |
| J3_7QVP_002 | 1/L1/44:45, 1/L1/58:64, 1/L1/95:99 | No text annotation | homologous J3_8C3A_060 NA | |
| J3_7QVP_003 | 1/L5/112:116, 1/L5/155:160, 1/L5/275:278 | No text annotation | ||
| J3_7QVP_062 | 1/L5/196:199, 1/L5/215:228, 1/L5/240:244 | No text annotation | ||
| J3_7QVP_063 | 1/L5/351:367, 1/L5/374:379, 1/L8/21:24 | No text annotation | homologous J3_8P9A_045 J3_07616.1 | |
| J3_7QVP_064 | 1/L5/380:387, 1/L5/414:415, 1/L8/19:20 | No text annotation | geometric J3_4WF9_010 J3_68715.1 | |
| J3_7QVP_065 | 1/L5/380:390, 1/L5/401:415, 1/L8/19:20 | No text annotation | homologous J3_8P9A_047 J3_17917.1 | |
| J3_7QVP_066 | 1/L5/451:455, 1/L5/701:705, 1/L5/1292:1296 | No text annotation | ||
| J3_7QVP_004 | 1/L5/712:713, 1/L5/955:976, 1/L5/1278:1284 | No text annotation | ||
| J3_7QVP_005 | 1/L5/1531:1537, 1/L5/1622:1624, 1/L5/1640:1643 | No text annotation | homologous J3_8C3A_003 NA | |
| J3_7QVP_006 | 1/L5/1546:1548, 1/L5/1580:1584, 1/L5/1609:1612 | No text annotation | homologous J3_8C3A_004 NA | |
| J3_7QVP_067 | 1/L5/1726:1727, 1/L5/1802:1806, 1/L5/1832:1837 | No text annotation | homologous J3_8P9A_051 J3_84137.1 | |
| J3_7QVP_007 | 1/L5/2393:2399, 1/L5/2805:2807, 1/L5/2819:2822 | No text annotation | homologous J3_8C3A_006 NA | |
| J3_7QVP_008 | 1/L5/2402:2405, 1/L5/2785:2791, 1/L5/2800:2802 | No text annotation | homologous J3_8C3A_007 NA | |
| J3_7QVP_009 | 1/L5/2440:2445, 1/L5/2515:2519, 1/L5/2536:2537 | No text annotation | homologous J3_8P9A_055 J3_94309.1 | |
| J3_7QVP_068 | 1/L5/2451:2456, 1/L5/2465:2476, 1/L5/2501:2508 | No text annotation | ||
| J3_7QVP_010 | 1/L5/2551:2555, 1/L5/2572:2575, 1/L5/2757:2767 | No text annotation | ||
| J3_7QVP_011 | 1/L5/2575:2576, 1/L5/2585:2589, 1/L5/2756:2757 | No text annotation | homologous J3_8C3A_054 NA | |
| J3_7QVP_069 | 1/L5/2598:2602, 1/L5/2737:2738, 1/L5/2742:2747 | No text annotation | homologous J3_8C3A_055 NA | |
| J3_7QVP_012 | 1/L5/3937:3939, 1/L5/4074:4078, 1/L5/4168:4173 | No text annotation | geometric J3_8VTW_006 NA | |
| J3_7QVP_070 | 1/L5/4228:4230, 1/L5/4331:4342, 1/L5/4370:4375 | No text annotation | homologous J3_8C3A_056 NA | |
| J3_7QVP_013 | 1/L5/4241:4243, 1/L5/4267:4269, 1/L5/4278:4283 | No text annotation | homologous J3_8C3A_010 NA | |
| J3_7QVP_014 | 1/L5/4463:4466, 1/L5/4491:4493, 1/L5/4507:4513 | No text annotation | homologous J3_8C3A_011 NA | |
| J3_7QVP_071 | 1/L5/4751:4754, 1/L5/4879:4883, 1/L5/4936:4948 | No text annotation | ||
| J3_7QVP_015 | 1/L5/4970:4972, 1/L5/4986:4991, 1/L5/5060:5063 | No text annotation | ||
| J3_7QVP_072 | 1/L5/4970:4975, 1/L5/4983:4991, 1/L5/5060:5063 | No text annotation | ||
| J3_7QVP_016 | 1/L6/112:116, 1/L6/155:160, 1/L6/275:278 | No text annotation | ||
| J3_7QVP_073 | 1/L6/196:199, 1/L6/215:228, 1/L6/240:244 | No text annotation | ||
| J3_7QVP_074 | 1/L6/451:455, 1/L6/701:705, 1/L6/1292:1296 | No text annotation | ||
| J3_7QVP_017 | 1/L6/712:713, 1/L6/955:976, 1/L6/1278:1284 | No text annotation | ||
| J3_7QVP_018 | 1/L6/1531:1537, 1/L6/1622:1624, 1/L6/1640:1643 | No text annotation | homologous J3_8C3A_003 NA | |
| J3_7QVP_019 | 1/L6/1546:1548, 1/L6/1580:1584, 1/L6/1609:1612 | No text annotation | homologous J3_8C3A_004 NA | |
| J3_7QVP_075 | 1/L6/1726:1727, 1/L6/1802:1806, 1/L6/1832:1837 | No text annotation | homologous J3_8P9A_051 J3_84137.1 | |
| J3_7QVP_020 | 1/L6/2393:2399, 1/L6/2805:2807, 1/L6/2819:2822 | No text annotation | homologous J3_8C3A_006 NA | |
| J3_7QVP_021 | 1/L6/2402:2405, 1/L6/2785:2791, 1/L6/2800:2802 | No text annotation | homologous J3_8C3A_007 NA | |
| J3_7QVP_022 | 1/L6/2440:2445, 1/L6/2515:2519, 1/L6/2536:2537 | No text annotation | homologous J3_8P9A_055 J3_94309.1 | |
| J3_7QVP_076 | 1/L6/2451:2456, 1/L6/2465:2476, 1/L6/2501:2508 | No text annotation | ||
| J3_7QVP_023 | 1/L6/2551:2555, 1/L6/2572:2575, 1/L6/2757:2767 | No text annotation | ||
| J3_7QVP_024 | 1/L6/2575:2576, 1/L6/2585:2589, 1/L6/2756:2757 | No text annotation | homologous J3_8C3A_054 NA | |
| J3_7QVP_077 | 1/L6/2598:2602, 1/L6/2737:2738, 1/L6/2742:2747 | No text annotation | homologous J3_8P9A_058 J3_08594.1 | |
| J3_7QVP_025 | 1/L6/3937:3939, 1/L6/4074:4078, 1/L6/4168:4173 | No text annotation | geometric J3_8VTW_006 NA | |
| J3_7QVP_026 | 1/L6/4091:4097, 1/L6/4112:4129, 1/L6/4155:4158 | No text annotation | ||
| J3_7QVP_078 | 1/L6/4228:4230, 1/L6/4331:4342, 1/L6/4370:4375 | No text annotation | homologous J3_8C3A_056 NA | |
| J3_7QVP_027 | 1/L6/4241:4243, 1/L6/4267:4269, 1/L6/4278:4283 | No text annotation | homologous J3_8C3A_010 NA | |
| J3_7QVP_028 | 1/L6/4463:4466, 1/L6/4491:4493, 1/L6/4507:4513 | No text annotation | homologous J3_8C3A_011 NA | |
| J3_7QVP_079 | 1/L6/4751:4754, 1/L6/4879:4883, 1/L6/4936:4948 | No text annotation | ||
| J3_7QVP_029 | 1/L6/4970:4972, 1/L6/4986:4991, 1/L6/5060:5063 | No text annotation | ||
| J3_7QVP_030 | 1/L7/9:14, 1/L7/65:66, 1/L7/109:110 | No text annotation | homologous J3_5TBW_045 NA | |
| J3_7QVP_031 | 1/L8/44:55, 1/L8/62:64, 1/L8/95:99 | No text annotation | geometric J3_4WF9_001 J3_47707.1 | |
| J3_7QVP_080 | 1/L9/9:14, 1/L9/65:66, 1/L9/109:110 | No text annotation | homologous J3_8C3A_059 NA | |
| J3_7QVP_033 | 1/S2/40:41, 1/S2/481:487, 1/S2/512:514 | No text annotation | geometric J3_4V88_078 NA | |
| J3_7QVP_081 | 1/S2/40:47, 1/S2/479:487, 1/S2/512:514 | No text annotation | homologous J3_8P9A_069 J3_63856.1 | |
| J3_7QVP_034 | 1/S2/682:685, 1/S2/917:922, 1/S2/1022:1023 | No text annotation | ||
| J3_7QVP_082 | 1/S2/682:685, 1/S2/917:924, 1/S2/1018:1023 | No text annotation | ||
| J3_7QVP_036 | 1/S2/816:819, 1/S2/829:831, 1/S2/843:848 | No text annotation | homologous J3_8C3A_035 NA | |
| J3_7QVP_037 | 1/S2/938:941, 1/S2/985:993, 1/S2/1000:1004 | No text annotation | homologous J3_8P9A_074 J3_23895.1 | |
| J3_7QVP_038 | 1/S2/1094:1096, 1/S2/1136:1141, 1/S2/1146:1151 | No text annotation | ||
| J3_7QVP_039 | 1/S2/1218:1221, 1/S2/1645:1651, 1/S2/1673:1680 | No text annotation | homologous J3_8C3A_038 NA | |
| J3_7QVP_040 | 1/S2/1225:1228, 1/S2/1530:1532, 1/S2/1638:1641 | No text annotation | homologous J3_8P9A_077 J3_44359.1 | |
| J3_7QVP_041 | 1/S2/1237:1244, 1/S2/1255:1266, 1/S2/1516:1520 | No text annotation | homologous J3_8C3A_040 NA | |
| J3_7QVP_042 | 1/S2/1272:1277, 1/S2/1320:1324, 1/S2/1504:1510 | No text annotation | homologous J3_8C3A_041 NA | |
| J3_7QVP_043 | 1/S2/1340:1345, 1/S2/1384:1389, 1/S2/1481:1486 | No text annotation | homologous J3_8P9A_080 J3_17077.1 | |
| J3_7QVP_044 | 1/S2/1350:1351, 1/S2/1360:1363, 1/S2/1375:1379 | No text annotation | homologous J3_8P9A_081 J3_76043.4 | |
| J3_7QVP_045 | 1/S2/1391:1395, 1/S2/1450:1456, 1/S2/1470:1479 | No text annotation | ||
| J3_7QVP_046 | 1/S2/1532:1536, 1/S2/1597:1604, 1/S2/1635:1638 | No text annotation | homologous J3_8C3A_044 NA | |
| J3_7QVP_047 | 1/S3/40:41, 1/S3/481:487, 1/S3/512:514 | No text annotation | geometric J3_8C3A_082 NA | |
| J3_7QVP_083 | 1/S3/40:47, 1/S3/479:487, 1/S3/512:514 | No text annotation | homologous J3_8P9A_069 J3_63856.1 | |
| J3_7QVP_048 | 1/S3/682:685, 1/S3/917:922, 1/S3/1022:1023 | No text annotation | ||
| J3_7QVP_084 | 1/S3/682:685, 1/S3/917:923, 1/S3/1019:1023 | No text annotation | ||
| J3_7QVP_049 | 1/S3/816:819, 1/S3/829:831, 1/S3/843:848 | No text annotation | homologous J3_8C3A_035 NA | |
| J3_7QVP_050 | 1/S3/938:941, 1/S3/985:993, 1/S3/1000:1004 | No text annotation | homologous J3_8P9A_074 J3_23895.1 | |
| J3_7QVP_051 | 1/S3/1094:1096, 1/S3/1136:1140, 1/S3/1147:1151 | No text annotation | ||
| J3_7QVP_052 | 1/S3/1218:1221, 1/S3/1645:1651, 1/S3/1673:1680 | No text annotation | homologous J3_8C3A_038 NA | |
| J3_7QVP_053 | 1/S3/1225:1228, 1/S3/1530:1532, 1/S3/1638:1641 | No text annotation | homologous J3_8C3A_039 NA | |
| J3_7QVP_054 | 1/S3/1237:1244, 1/S3/1255:1266, 1/S3/1516:1520 | No text annotation | homologous J3_8C3A_040 NA | |
| J3_7QVP_085 | 1/S3/1272:1277, 1/S3/1320:1324, 1/S3/1504:1510 | No text annotation | homologous J3_8C3A_041 NA | |
| J3_7QVP_056 | 1/S3/1342:1345, 1/S3/1384:1389, 1/S3/1481:1483 | No text annotation | ||
| J3_7QVP_057 | 1/S3/1350:1351, 1/S3/1360:1363, 1/S3/1375:1379 | No text annotation | homologous J3_8P9A_081 J3_76043.4 | |
| J3_7QVP_058 | 1/S3/1391:1395, 1/S3/1450:1456, 1/S3/1470:1479 | No text annotation | ||
| J3_7QVP_059 | 1/S3/1532:1536, 1/S3/1597:1604, 1/S3/1635:1638 | No text annotation | homologous J3_8C3A_044 NA | |
| J4_7QVP_001 | 1/B4/7:10, 1/B4/25:27, 1/B4/43:49, 1/B4/65:66 | tRNA junction | homologous J4_8VU0_001 J4_95067.1 | |
| J4_7QVP_006 | 1/L5/111:112, 1/L5/278:283, 1/L5/304:310, 1/L5/327:330 | No text annotation | homologous J4_8P9A_012 J4_94698.1 | |
| J4_7QVP_007 | 1/L5/196:199, 1/L5/215:222, 1/L5/226:228, 1/L5/240:244 | No text annotation | ||
| J4_7QVP_034 | 1/L5/981:983, 1/L5/1070:1072, 1/L5/1240:1243, 1/L5/1268:1273 | No text annotation | ||
| J4_7QVP_009 | 1/L5/2365:2371, 1/L5/2389:2391, 1/L5/2824:2829, 1/L5/3856:3857 | No text annotation | ||
| J4_7QVP_010 | 1/L5/2406:2410, 1/L5/2434:2439, 1/L5/2538:2539, 1/L5/2777:2784 | No text annotation | ||
| J4_7QVP_011 | 1/L5/2409:2410, 1/L5/2434:2439, 1/L5/2538:2539, 1/L5/2777:2783 | No text annotation | ||
| J4_7QVP_012 | 1/L5/2618:2619, 1/L5/2637:2642, 1/L5/2692:2698, 1/L5/2718:2719 | No text annotation | ||
| J4_7QVP_013 | 1/L5/3634:3638, 1/L5/3650:3654, 1/L5/3690:3694, 1/L5/3821:3826 | No text annotation | homologous J4_8C3A_006 NA | |
| J4_7QVP_014 | 1/L5/3696:3698, 1/L5/3752:3753, 1/L5/3771:3780, 1/L5/3814:3819 | No text annotation | homologous J4_8C3A_007 NA | |
| J4_7QVP_015 | 1/L5/4231:4235, 1/L5/4289:4291, 1/L5/4318:4319, 1/L5/4328:4330 | No text annotation | ||
| J4_7QVP_016 | 1/L5/4231:4235, 1/L5/4289:4293, 1/L5/4317:4319, 1/L5/4328:4330 | No text annotation | homologous J4_8C3A_008 NA | |
| J4_7QVP_017 | 1/L5/4587:4590, 1/L5/4620:4621, 1/L5/4676:4678, 1/L5/4712:4715 | No text annotation | ||
| J4_7QVP_018 | 1/L6/111:112, 1/L6/278:283, 1/L6/304:310, 1/L6/327:330 | No text annotation | homologous J4_8P9A_012 J4_94698.1 | |
| J4_7QVP_019 | 1/L6/196:199, 1/L6/215:222, 1/L6/226:228, 1/L6/240:244 | No text annotation | ||
| J4_7QVP_021 | 1/L6/2365:2371, 1/L6/2389:2391, 1/L6/2824:2829, 1/L6/3856:3857 | No text annotation | ||
| J4_7QVP_022 | 1/L6/2406:2410, 1/L6/2434:2439, 1/L6/2538:2539, 1/L6/2777:2784 | No text annotation | ||
| J4_7QVP_023 | 1/L6/2409:2410, 1/L6/2434:2439, 1/L6/2538:2539, 1/L6/2777:2783 | No text annotation | ||
| J4_7QVP_024 | 1/L6/2618:2619, 1/L6/2637:2642, 1/L6/2692:2698, 1/L6/2718:2719 | No text annotation | ||
| J4_7QVP_025 | 1/L6/3634:3638, 1/L6/3650:3654, 1/L6/3690:3694, 1/L6/3821:3826 | No text annotation | homologous J4_8P9A_017 J4_78485.1 | |
| J4_7QVP_026 | 1/L6/3696:3698, 1/L6/3752:3753, 1/L6/3771:3780, 1/L6/3814:3819 | No text annotation | homologous J4_8P9A_018 J4_42306.1 | |
| J4_7QVP_027 | 1/L6/4231:4235, 1/L6/4289:4291, 1/L6/4318:4319, 1/L6/4328:4330 | No text annotation | ||
| J4_7QVP_028 | 1/L6/4231:4235, 1/L6/4289:4293, 1/L6/4317:4319, 1/L6/4328:4330 | No text annotation | homologous J4_8C3A_008 NA | |
| J4_7QVP_029 | 1/L6/4587:4590, 1/L6/4620:4621, 1/L6/4676:4678, 1/L6/4712:4715 | No text annotation | ||
| J4_7QVP_030 | 1/S2/98:106, 1/S2/355:357, 1/S2/405:409, 1/S2/431:432 | No text annotation | homologous J4_8P9A_021 J4_15241.2 | |
| J4_7QVP_031 | 1/S2/671:673, 1/S2/1032:1037, 1/S2/1078:1089, 1/S2/1160:1161 | No text annotation | homologous J4_8C3A_022 NA | |
| J4_7QVP_032 | 1/S3/98:106, 1/S3/355:357, 1/S3/405:409, 1/S3/431:432 | No text annotation | homologous J4_8P9A_021 J4_15241.2 | |
| J4_7QVP_033 | 1/S3/671:673, 1/S3/1032:1037, 1/S3/1078:1089, 1/S3/1160:1161 | No text annotation | homologous J4_8C3A_022 NA | |
| J5_7QVP_001 | 1/L1/35:42, 1/L1/101:106, 1/L1/113:114, 1/L1/136:138, 1/L6/19:21 | No text annotation | ||
| J5_7QVP_002 | 1/L5/19:21, 1/L8/35:42, 1/L8/101:106, 1/L8/113:114, 1/L8/136:138 | No text annotation | homologous J5_8P9A_010 J5_27223.1 | |
| J5_7QVP_003 | 1/L5/1335:1340, 1/L5/1516:1519, 1/L5/1658:1661, 1/L5/2288:2290, 1/L5/2345:2351 | No text annotation | homologous J5_8C3A_002 NA | |
| J5_7QVP_004 | 1/L5/2855:2863, 1/L5/2887:2888, 1/L5/3613:3614, 1/L5/3618:3626, 1/L5/3835:3837 | No text annotation | homologous J5_8C3A_004 NA | |
| J5_7QVP_005 | 1/L5/3903:3910, 1/L5/4392:4400, 1/L5/4444:4453, 1/L5/4528:4534, 1/L5/4552:4557 | No text annotation | ||
| J5_7QVP_006 | 1/L5/3920:3923, 1/L5/4188:4191, 1/L5/4204:4205, 1/L5/4227:4228, 1/L5/4375:4381 | No text annotation | homologous J5_8P9A_015 J5_96125.1 | |
| J5_7QVP_007 | 1/L6/1335:1340, 1/L6/1516:1519, 1/L6/1658:1661, 1/L6/2288:2290, 1/L6/2345:2351 | No text annotation | homologous J5_8C3A_002 NA | |
| J5_7QVP_008 | 1/L6/2855:2863, 1/L6/2887:2888, 1/L6/3613:3614, 1/L6/3618:3626, 1/L6/3835:3837 | No text annotation | homologous J5_8C3A_004 NA | |
| J5_7QVP_009 | 1/L6/3903:3910, 1/L6/4392:4400, 1/L6/4444:4453, 1/L6/4528:4534, 1/L6/4552:4557 | No text annotation | ||
| J5_7QVP_010 | 1/L6/3920:3923, 1/L6/4188:4191, 1/L6/4204:4205, 1/L6/4227:4228, 1/L6/4375:4381 | No text annotation | homologous J5_8P9A_015 J5_96125.1 | |
| J5_7QVP_011 | 1/S2/30:34, 1/S2/521:527, 1/S2/558:565, 1/S2/585:595, 1/S2/641:644 | No text annotation | ||
| J5_7QVP_012 | 1/S2/53:56, 1/S2/89:96, 1/S2/434:436, 1/S2/457:459, 1/S2/470:474 | No text annotation | homologous J5_8C3A_020 NA | |
| J5_7QVP_013 | 1/S2/123:129, 1/S2/183:185, 1/S2/214:215, 1/S2/310:312, 1/S2/337:341 | No text annotation | ||
| J5_7QVP_014 | 1/S3/53:56, 1/S3/89:96, 1/S3/434:436, 1/S3/457:459, 1/S3/470:474 | No text annotation | homologous J5_8C3A_020 NA | |
| J5_7QVP_016 | 1/S3/123:129, 1/S3/183:185, 1/S3/214:219, 1/S3/302:312, 1/S3/337:341 | No text annotation | ||
| J6_7QVP_001 | 1/L1/33:35, 1/L6/21:26, 1/L6/57:67, 1/L6/74:78, 1/L6/105:109, 1/L6/332:339 | No text annotation | ||
| J6_7QVP_002 | 1/L5/21:26, 1/L5/57:67, 1/L5/74:78, 1/L5/105:109, 1/L5/332:339, 1/L8/33:35 | No text annotation | ||
| J6_7QVP_003 | 1/L5/1352:1355, 1/L5/1384:1388, 1/L5/1395:1399, 1/L5/1418:1421, 1/L5/1464:1466, 1/L5/1499:1504 | No text annotation | ||
| J6_7QVP_004 | 1/L5/3920:3923, 1/L5/4188:4191, 1/L5/4204:4205, 1/L5/4227:4230, 1/L5/4331:4342, 1/L5/4370:4381 | No text annotation | ||
| J6_7QVP_005 | 1/L6/1352:1355, 1/L6/1384:1388, 1/L6/1395:1399, 1/L6/1418:1421, 1/L6/1464:1466, 1/L6/1499:1504 | No text annotation | ||
| J6_7QVP_006 | 1/L6/3920:3923, 1/L6/4188:4191, 1/L6/4204:4205, 1/L6/4227:4230, 1/L6/4331:4342, 1/L6/4370:4381 | No text annotation | ||
| J7_7QVP_001 | 1/L5/1666:1671, 1/L5/1684:1685, 1/L5/1852:1855, 1/L5/1879:1884, 1/L5/1895:1899, 1/L5/2077:2078, 1/L5/2278:2283 | No text annotation | ||
| J7_7QVP_002 | 1/L6/1666:1671, 1/L6/1684:1685, 1/L6/1852:1855, 1/L6/1879:1884, 1/L6/1895:1899, 1/L6/2077:2078, 1/L6/2278:2283 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_7QVP_032 | No text annotation | ||
| J3_7QVP_035 | No text annotation | ||
| J3_7QVP_055 | No text annotation | ||
| J3_7QVP_086 | No text annotation | ||
| J4_7QVP_002 | tRNA junction | ||
| J4_7QVP_003 | No text annotation | ||
| J4_7QVP_004 | No text annotation | ||
| J4_7QVP_005 | No text annotation | ||
| J4_7QVP_008 | No text annotation | ||
| J4_7QVP_020 | No text annotation | ||
| J5_7QVP_015 | No text annotation |
Coloring options: