HL_7QVP_006

3D structure

PDB id

7QVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human collided disome (di-ribosome) stalled on XBP1 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAUCGAAAC

Length

9 nucleotides

Bulged bases

7QVP|1|B5|C|55, 7QVP|1|B5|G|56

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QVP_006 not in the Motif Atlas

Geometric match to HL_6ORD_037

Geometric discrepancy: 0.3233

The information below is about HL_6ORD_037

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.3

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

143

Unit IDs

7QVP|1|B5|G|52
7QVP|1|B5|A|53
7QVP|1|B5|U|54
7QVP|1|B5|C|55
7QVP|1|B5|G|56
7QVP|1|B5|A|57
7QVP|1|B5|A|58
7QVP|1|B5|A|59
7QVP|1|B5|C|60

Current chains

Chain B5

tRNA P/E

Nearby chains