HL_7QVP_009

3D structure

PDB id

7QVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human collided disome (di-ribosome) stalled on XBP1 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUUCGACUC

Length

9 nucleotides

Bulged bases

7QVP|1|CC|C|55, 7QVP|1|CC|G|56

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QVP_009 not in the Motif Atlas

Geometric match to HL_1GAX_006

Geometric discrepancy: 0.2496

The information below is about HL_1GAX_006

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.9

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

7QVP|1|CC|G|52
7QVP|1|CC|U|53
7QVP|1|CC|U|54
7QVP|1|CC|C|55
7QVP|1|CC|G|56
7QVP|1|CC|A|57
7QVP|1|CC|C|58
7QVP|1|CC|U|59
7QVP|1|CC|C|60

Current chains

Chain CC

tNRA E/E

Nearby chains