HL_7QVP_020

3D structure

PDB id

7QVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human collided disome (di-ribosome) stalled on XBP1 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGCGGCG

Length

7 nucleotides

Bulged bases

7QVP|1|L5|G|134, 7QVP|1|L5|G|135, 7QVP|1|L5|C|136

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QVP_020 not in the Motif Atlas

Geometric match to HL_4WF9_011

Geometric discrepancy: 0.1714

The information below is about HL_4WF9_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

7QVP|1|L5|C|131
7QVP|1|L5|G|132
7QVP|1|L5|C|133
7QVP|1|L5|G|134
7QVP|1|L5|G|135
7QVP|1|L5|C|136
7QVP|1|L5|G|137

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain L8

5.8S ribosomal RNA; 5.8S rRNA

Chain LN

60S ribosomal protein L15

Chain Lh

60S ribosomal protein L35

Chain Lj

Ribosomal protein L37