HL_7QVP_031

3D structure

PDB id

7QVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human collided disome (di-ribosome) stalled on XBP1 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GACUGUCCCCAGU

Length

13 nucleotides

Bulged bases

7QVP|1|L5|G|1178, 7QVP|1|L5|U|1179, 7QVP|1|L5|C|1181, 7QVP|1|L5|C|1182

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7QVP|1|L5|G|1174
7QVP|1|L5|A|1175
7QVP|1|L5|C|1176
7QVP|1|L5|U|1177
7QVP|1|L5|G|1178
7QVP|1|L5|U|1179
7QVP|1|L5|C|1180
7QVP|1|L5|C|1181
7QVP|1|L5|C|1182
7QVP|1|L5|C|1183
7QVP|1|L5|A|1184
7QVP|1|L5|G|1185
7QVP|1|L5|U|1186

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain L7

5S ribosomal RNA; 5S rRNA

Chain LD

60S ribosomal protein L5

Chain LI

60S ribosomal protein L10-like