HL_7QVP_034

3D structure

PDB id

7QVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human collided disome (di-ribosome) stalled on XBP1 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UCGCACGAAA

Length

10 nucleotides

Bulged bases

7QVP|1|L5|C|1365, 7QVP|1|L5|A|1371

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7QVP|1|L5|U|1364
7QVP|1|L5|C|1365
7QVP|1|L5|G|1366
7QVP|1|L5|C|1367
7QVP|1|L5|A|1368
7QVP|1|L5|C|1369
7QVP|1|L5|G|1370
7QVP|1|L5|A|1371
7QVP|1|L5|A|1372
7QVP|1|L5|A|1373

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain L8

5.8S ribosomal RNA; 5.8S rRNA

Chain LC

60S ribosomal protein L4

Chain LL

60S ribosomal protein L13

Chain LN

60S ribosomal protein L15

Chain LY

KOW domain-containing protein