HL_7QVP_054

3D structure

PDB id

7QVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human collided disome (di-ribosome) stalled on XBP1 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUUCAGAUCC

Length

10 nucleotides

Bulged bases

7QVP|1|L5|U|2530, 7QVP|1|L5|C|2531

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QVP_054 not in the Motif Atlas

Homologous match to HL_8C3A_035

Geometric discrepancy: 0.0993

The information below is about HL_8C3A_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_35087.1

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

7QVP|1|L5|G|2523
7QVP|1|L5|U|2524
7QVP|1|L5|U|2525
7QVP|1|L5|C|2526
7QVP|1|L5|A|2527
7QVP|1|L5|G|2528
7QVP|1|L5|A|2529
7QVP|1|L5|U|2530
7QVP|1|L5|C|2531
7QVP|1|L5|C|2532

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LR

60S ribosomal protein L19

Chain LX

60S ribosomal protein L23a

Chain Lg

60S ribosomal protein L34