HL_7QVP_064

3D structure

PDB id

7QVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human collided disome (di-ribosome) stalled on XBP1 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGGUCGGUCGCGGCCGGCGCCUAGC

Length

25 nucleotides

Bulged bases

7QVP|1|L5|G|2910, 7QVP|1|L5|G|3590, 7QVP|1|L5|A|3596

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7QVP|1|L5|G|2901
7QVP|1|L5|G|2902
7QVP|1|L5|G|2903
7QVP|1|L5|U|2904
7QVP|1|L5|C|2905
7QVP|1|L5|G|2906
7QVP|1|L5|G|2907
7QVP|1|L5|U|2908
7QVP|1|L5|C|2909
7QVP|1|L5|G|2910
7QVP|1|L5|C|3584
7QVP|1|L5|G|3585
7QVP|1|L5|G|3586
7QVP|1|L5|C|3587
7QVP|1|L5|C|3588
7QVP|1|L5|G|3589
7QVP|1|L5|G|3590
7QVP|1|L5|C|3591
7QVP|1|L5|G|3592
7QVP|1|L5|C|3593
7QVP|1|L5|C|3594
7QVP|1|L5|U|3595
7QVP|1|L5|A|3596
7QVP|1|L5|G|3597
7QVP|1|L5|C|3598

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LR

60S ribosomal protein L19

Chain SI

40S ribosomal protein S8

Chain SL

40S ribosomal protein S11