HL_7QVP_072

3D structure

PDB id

7QVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human collided disome (di-ribosome) stalled on XBP1 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AGACACGUUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QVP_072 not in the Motif Atlas

Geometric match to HL_4V9F_003

Geometric discrepancy: 0.186

The information below is about HL_4V9F_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

7QVP|1|L5|A|3945
7QVP|1|L5|G|3946
7QVP|1|L5|A|3947
7QVP|1|L5|C|3948
7QVP|1|L5|A|3949
7QVP|1|L5|C|4064
7QVP|1|L5|G|4065
7QVP|1|L5|U|4066
7QVP|1|L5|U|4067
7QVP|1|L5|U|4068

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain Li

60S ribosomal protein L36

Chain SB

40S ribosomal protein S3a