HL_7QVP_073

3D structure

PDB id

7QVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human collided disome (di-ribosome) stalled on XBP1 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAGCCCCGAGGGGCUC

Length

16 nucleotides

Bulged bases

7QVP|1|L5|G|4104

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7QVP|1|L5|G|4097
7QVP|1|L5|A|4098
7QVP|1|L5|G|4099
7QVP|1|L5|C|4100
7QVP|1|L5|C|4101
7QVP|1|L5|C|4102
7QVP|1|L5|C|4103
7QVP|1|L5|G|4104
7QVP|1|L5|A|4105
7QVP|1|L5|G|4106
7QVP|1|L5|G|4107
7QVP|1|L5|G|4108
7QVP|1|L5|G|4109
7QVP|1|L5|C|4110
7QVP|1|L5|U|4111
7QVP|1|L5|C|4112

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LG

60S ribosomal protein L7a

Chain Lg

60S ribosomal protein L34

Chain RE

40S ribosomal protein S4, X isoform

Chain S3

Small subunit ribosomal RNA; SSU rRNA