HL_7QVP_075

3D structure

PDB id

7QVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human collided disome (di-ribosome) stalled on XBP1 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

7QVP|1|L5|G|4195

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QVP_075 not in the Motif Atlas

Homologous match to HL_8C3A_055

Geometric discrepancy: 0.1131

The information below is about HL_8C3A_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

7QVP|1|L5|C|4193
7QVP|1|L5|U|4194
7QVP|1|L5|G|4195
7QVP|1|L5|G|4196
7QVP|1|L5|G|4197
7QVP|1|L5|G|4198
7QVP|1|L5|C|4199
7QVP|1|L5|G|4200
7QVP|1|L5|G|4201

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain B4

Transfer RNA; tRNA

Chain LI

60S ribosomal protein L10-like

Chain Lb

60S ribosomal protein L29