HL_7QVP_088

3D structure

PDB id

7QVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human collided disome (di-ribosome) stalled on XBP1 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

7QVP|1|L5|G|4694, 7QVP|1|L5|C|4698

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QVP_088 not in the Motif Atlas

Homologous match to HL_8C3A_068

Geometric discrepancy: 0.0851

The information below is about HL_8C3A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

7QVP|1|L5|C|4688
7QVP|1|L5|U|4689
7QVP|1|L5|G|4690
7QVP|1|L5|A|4691
7QVP|1|L5|A|4692
7QVP|1|L5|C|4693
7QVP|1|L5|G|4694
7QVP|1|L5|C|4695
7QVP|1|L5|C|4696
7QVP|1|L5|U|4697
7QVP|1|L5|C|4698
7QVP|1|L5|U|4699
7QVP|1|L5|A|4700
7QVP|1|L5|A|4701
7QVP|1|L5|G|4702

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LH

60S ribosomal protein L9

Chain LO

60S ribosomal protein L13a

Chain Lm

Ubiquitin-60S ribosomal protein L40