HL_7QVP_097

3D structure

PDB id

7QVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human collided disome (di-ribosome) stalled on XBP1 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UCUGAUCG

Length

8 nucleotides

Bulged bases

7QVP|1|L6|C|210

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QVP_097 not in the Motif Atlas

Homologous match to HL_8C3A_005

Geometric discrepancy: 0.4591

The information below is about HL_8C3A_005

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_58705.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

7QVP|1|L6|U|204
7QVP|1|L6|C|205
7QVP|1|L6|U|206
7QVP|1|L6|G|207
7QVP|1|L6|A|208
7QVP|1|L6|U|209
7QVP|1|L6|C|210
7QVP|1|L6|G|211

Current chains

Chain L6

28S ribosomal RNA

Nearby chains

Chain MY

KOW domain-containing protein