HL_7QVP_110
3D structure
- PDB id
- 7QVP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human collided disome (di-ribosome) stalled on XBP1 mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CUCGCACGAAAG
- Length
- 12 nucleotides
- Bulged bases
- 7QVP|1|L6|C|1365, 7QVP|1|L6|A|1371
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7QVP_110 not in the Motif Atlas
- Geometric match to HL_2ZZM_002
- Geometric discrepancy: 0.346
- The information below is about HL_2ZZM_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_33487.1
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
7QVP|1|L6|C|1363
7QVP|1|L6|U|1364
7QVP|1|L6|C|1365
7QVP|1|L6|G|1366
7QVP|1|L6|C|1367
7QVP|1|L6|A|1368
7QVP|1|L6|C|1369
7QVP|1|L6|G|1370
7QVP|1|L6|A|1371
7QVP|1|L6|A|1372
7QVP|1|L6|A|1373
7QVP|1|L6|G|1374
Current chains
- Chain L6
- 28S ribosomal RNA
Nearby chains
- Chain L1
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain MC
- 60S ribosomal protein L4
- Chain ML
- 60S ribosomal protein L13
- Chain MN
- 60S ribosomal protein L15
- Chain MY
- KOW domain-containing protein
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