HL_7QVP_147

3D structure

PDB id

7QVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human collided disome (di-ribosome) stalled on XBP1 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

7QVP|1|L6|A|3876, 7QVP|1|L6|A|3877, 7QVP|1|L6|C|3878

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QVP_147 not in the Motif Atlas

Homologous match to HL_8C3A_051

Geometric discrepancy: 0.0601

The information below is about HL_8C3A_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

7QVP|1|L6|G|3873
7QVP|1|L6|G|3874
7QVP|1|L6|G|3875
7QVP|1|L6|A|3876
7QVP|1|L6|A|3877
7QVP|1|L6|C|3878
7QVP|1|L6|G|3879
7QVP|1|L6|G|3880
7QVP|1|L6|G|3881
7QVP|1|L6|C|3882

Current chains

Chain L6

28S ribosomal RNA

Nearby chains

Chain MB

60S ribosomal protein L3

Chain Me

60S ribosomal protein L32